Gene detail

Detailed information of g25004.t1 in Acropora digitifera

Genomic Location: chr12Alt:351126...372256
NR annotation: XP_029213949.1, cullin-5-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g25004.t1

ATGTCTGCGTTGCTTTCAAACTCCAAGAAATCTGGCAGACAGTTTGAAGAAAAATGGCCTGAGCTTAAACCTACAGTGAACAAACTACTGAAGCAACAAGCAGTCTCTACCCAAGAGTGGCAAACTCTTTTCTGGGATGTCCATACGATTTGTACCTGGGATGAAAAAGGATCCCAAAAAGTACACAAGGCTTTAAAAGATGAAGTGGCATCCTTTATTAAACATGTCCAAGAGCGCGTCTTTAAGCATGAGGATAACTCTACTTTGTTGCGTTCATACATCAGGGAGTGGTCTAAGTTTTTCACTCAGTGCAGTTACCTTCCACAACCTTTCAACACTTTAGAATCCAACCTCCAGGGAAAAGCAGGGGGAGGTTCCAGCAAACGGCCACAAAATGAACAAAGTACCGTTCAGAAGTTAATGCTGGAAAGCTGGAATGATGGAATATTCAATACCATCAAATCAAAGCTGCAGTCAAGTGCCATGAGGTTGGTTCATGCTGAAAGAAATGGAGAAGCCTTTGATTCACAGCTGGTAATTGGAGTCAGAGAATCTTATGTAAATCTTAGTTCAGAGAATCTGGACAAGCTGAAAATTTACAGGGAAAACTTTGAAAAAGCTTACTTGGAAACTACAGAGGAGTTTTACAAAACACAAGCTGCTTCTTATTTGCAAGAGAACGGTGTTCAGAATTACATGCAATATGCTGAAATGAAATTAAAGGAAGAGGAACAGAGAGCTGTCAGATACCTCGAAACAAGGAAAAACTGTGACTCGGTTCTAGTGCTGACGGACTGTTGTGTAAATGTCCTTGTTGGAAATTTCAAAGAAACCATCCTAGCTGAGTGTCCTGGAATGATAGCTGCCAATGAGACAGAGAAACTCCTACTCATGTTTCAACTGATGGATCGTGTCCGAGGAGGAGTGGATCCCATGATAGCCAATCTAGAATCGTACATTGTAACCACAGGTCTGGATGATATGAAAGCATCGGCTGACACAATTACTAGTGACTCGGAAAAGTATGTGGAAGCGCTACTGACTCTATTCAACAGATTTAGCAAACTAGTGAAAGACGCCTTTAATGACGATCCACGCTTTCTTACAGCAAGAGATAAGGCATTCAAGACAGTTGTGAATGATAGTACAATTTTCAAGCTGGAACTGCCAAACAAGAGTAAATCCGGTGGTGGTGGCCTCAATACGAAGTCGCAACCAGAGTCTCGCTGTCCGGAGTTACTGGCAAATTTCTGTGACATGCTTCTTCGAAAAACTCCATACAGCAAGAAGCTAACTTCGGATGAAATTCAAGCAAAGCTTAAAGATGTGTTGCTGGTGCTTAAGTATGTTATTAATAAGGACGTTTTTATGAGGTACCACAAAGCGCACTTAACGAGGCGCTTGATACTGGACACATCAGCTGATAGTGAAATGGAAGAAAACATGGTGGAATGGCTAAGGGATGTTGGAATGCCCGCGGATTACATTAACAAACTTGCTCGTATGTTCCAAGACATCAAAGTTAGCAACGATTTGAACCAGGGCTTCAAAACAGAATACAAGAAAAAAGGTGGCATTGCAGACTCGGTTAACATAAAGATACTCAATGCTGGTGCGTGGTCCCGAGCTTCCGAGAGAATTCCAGTCTCTCTGCCCACCGAGCTTGAAGACTATATTCCAGGGGTGGAAGAATTTTATAGGAAAAACCACAGCGGCCGCAAGTTGCAGTGGCATCATCTCATGTCCAATGGAGTGATAACCTTTGCGAACAAGTCTGGAAGGTTTGATTTAGAAGTAACAACCTTCCAAATGGCTGTGTTGTTCTCTTGGAATGAACGGCCACATGAGAGAATTTCGTTCGAAAATTTGAGGCTTGCGTCAGAGCTTCCAGATTCAGAACTTCGGAGAACACTTTGGTCGCTAGTTGCCTTCGCCAAGCTCAAGCGACAGATTCTCCTTTGCCAACCTGAAGCAAAATCCCCGAAAGATTTTAGCGAAAGCTCCTTATTCTGGGTGAATGAAGATTTCGCCGTTATCAAAAATGGTAAAGTGCAGAAACGTGGCAAAGTGAATTTTATTGGTCGGTTACAACTTTCGACAGAAAAATCAAAACAAGAAGAGAATGATGGTATCGTTGCGTTGAGGATTCTAAGAATTCAGGCGACGATTGTCAAAATCATGAAGATGAGGAAGAGGATTACAAACGCGGCCCTTCAGACAGAACTTGTTGAGATTCTAAAAAACATGTTCATTCCTCAGAAGAAAATGATCAAGGAGCAAATCGAATGGCTTATTGATCACAAGTACCTCAGAAGAGACGAAGAAGACATCAATACATTCTTATACGTTGTTTAA

Transcript

chr12Alt.g25004.t1

ATATGTTTTTGTCAATGTCTGCACGGAATGAGATTGTAGGCAGTTGATCAAAGTAAAATGTCGGTGAAATAATGTCTGCGTTGCTTTCAAACTCCAAGAAATCTGGCAGACAGTTTGAAGAAAAATGGCCTGAGCTTAAACCTACAGTGAACAAACTACTGAAGCAACAAGCAGTCTCTACCCAAGAGTGGCAAACTCTTTTCTGGGATGTCCATACGATTTGTACCTGGGATGAAAAAGGATCCCAAAAAGTACACAAGGCTTTAAAAGATGAAGTGGCATCCTTTATTAAACATGTCCAAGAGCGCGTCTTTAAGCATGAGGATAACTCTACTTTGTTGCGTTCATACATCAGGGAGTGGTCTAAGTTTTTCACTCAGTGCAGTTACCTTCCACAACCTTTCAACACTTTAGAATCCAACCTCCAGGGAAAAGCAGGGGGAGGTTCCAGCAAACGGCCACAAAATGAACAAAGTACCGTTCAGAAGTTAATGCTGGAAAGCTGGAATGATGGAATATTCAATACCATCAAATCAAAGCTGCAGTCAAGTGCCATGAGGTTGGTTCATGCTGAAAGAAATGGAGAAGCCTTTGATTCACAGCTGGTAATTGGAGTCAGAGAATCTTATGTAAATCTTAGTTCAGAGAATCTGGACAAGCTGAAAATTTACAGGGAAAACTTTGAAAAAGCTTACTTGGAAACTACAGAGGAGTTTTACAAAACACAAGCTGCTTCTTATTTGCAAGAGAACGGTGTTCAGAATTACATGCAATATGCTGAAATGAAATTAAAGGAAGAGGAACAGAGAGCTGTCAGATACCTCGAAACAAGGAAAAACTGTGACTCGGTTCTAGTGCTGACGGACTGTTGTGTAAATGTCCTTGTTGGAAATTTCAAAGAAACCATCCTAGCTGAGTGTCCTGGAATGATAGCTGCCAATGAGACAGAGAAACTCCTACTCATGTTTCAACTGATGGATCGTGTCCGAGGAGGAGTGGATCCCATGATAGCCAATCTAGAATCGTACATTGTAACCACAGGTCTGGATGATATGAAAGCATCGGCTGACACAATTACTAGTGACTCGGAAAAGTATGTGGAAGCGCTACTGACTCTATTCAACAGATTTAGCAAACTAGTGAAAGACGCCTTTAATGACGATCCACGCTTTCTTACAGCAAGAGATAAGGCATTCAAGACAGTTGTGAATGATAGTACAATTTTCAAGCTGGAACTGCCAAACAAGAGTAAATCCGGTGGTGGTGGCCTCAATACGAAGTCGCAACCAGAGTCTCGCTGTCCGGAGTTACTGGCAAATTTCTGTGACATGCTTCTTCGAAAAACTCCATACAGCAAGAAGCTAACTTCGGATGAAATTCAAGCAAAGCTTAAAGATGTGTTGCTGGTGCTTAAGTATGTTATTAATAAGGACGTTTTTATGAGGTACCACAAAGCGCACTTAACGAGGCGCTTGATACTGGACACATCAGCTGATAGTGAAATGGAAGAAAACATGGTGGAATGGCTAAGGGATGTTGGAATGCCCGCGGATTACATTAACAAACTTGCTCGTATGTTCCAAGACATCAAAGTTAGCAACGATTTGAACCAGGGCTTCAAAACAGAATACAAGAAAAAAGGTGGCATTGCAGACTCGGTTAACATAAAGATACTCAATGCTGGTGCGTGGTCCCGAGCTTCCGAGAGAATTCCAGTCTCTCTGCCCACCGAGCTTGAAGACTATATTCCAGGGGTGGAAGAATTTTATAGGAAAAACCACAGCGGCCGCAAGTTGCAGTGGCATCATCTCATGTCCAATGGAGTGATAACCTTTGCGAACAAGTCTGGAAGGTTTGATTTAGAAGTAACAACCTTCCAAATGGCTGTGTTGTTCTCTTGGAATGAACGGCCACATGAGAGAATTTCGTTCGAAAATTTGAGGCTTGCGTCAGAGCTTCCAGATTCAGAACTTCGGAGAACACTTTGGTCGCTAGTTGCCTTCGCCAAGCTCAAGCGACAGATTCTCCTTTGCCAACCTGAAGCAAAATCCCCGAAAGATTTTAGCGAAAGCTCCTTATTCTGGGTGAATGAAGATTTCGCCGTTATCAAAAATGGTAAAGTGCAGAAACGTGGCAAAGTGAATTTTATTGGTCGGTTACAACTTTCGACAGAAAAATCAAAACAAGAAGAGAATGATGGTATCGTTGCGTTGAGGATTCTAAGAATTCAGGCGACGATTGTCAAAATCATGAAGATGAGGAAGAGGATTACAAACGCGGCCCTTCAGACAGAACTTGTTGAGATTCTAAAAAACATGTTCATTCCTCAGAAGAAAATGATCAAGGAGCAAATCGAATGGCTTATTGATCACAAGTACCTCAGAAGAGACGAAGAAGACATCAATACATTCTTATACGTTGTTTAATCACAGAATTGACAATAGGATTTTATCAACTTTCTCGAAAACTACACGTTCAAGGACCCGGCCTGGAATATCAAGAATCTACAGATTTTGTCCGAAATGTAGGAACATTAACAAGTAAAAATTAGCGATAGGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JJ31	Cullin-5 OS=Rattus norvegicus OX=10116 GN=Cul5 PE=1 SV=3
Q93034	Cullin-5 OS=Homo sapiens OX=9606 GN=CUL5 PE=1 SV=4
Q9D5V5	Cullin-5 OS=Mus musculus OX=10090 GN=Cul5 PE=1 SV=3

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 adaptor Cullin RING\|Cullin · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10557 all species →	Cullin_Nedd8	Cullin protein neddylation domain	Domain	Interproscan
PF00888 all species →	Cullin	Cullin family	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036317 all species →	Homologous_superfamily	Cullin homology domain superfamily	Interproscan
IPR016158 all species →	Domain	Cullin homology domain	Interproscan
IPR019559 all species →	Domain	Cullin protein, neddylation domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR001373 all species →	Domain	Cullin, N-terminal	Interproscan
IPR045093 all species →	Family	Cullin	Interproscan
IPR016159 all species →	Homologous_superfamily	Cullin repeat-like-containing domain superfamily	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11932 all species →	CULLIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0031625 all species →	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0019005 all species →	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0030674 all species →	Molecular Function	protein-macromolecule adaptor activity	Interproscan
GO:0031146 all species →	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0031461 all species →	Cellular Component	cullin-RING ubiquitin ligase complex	Interproscan
GO:0031466 all species →	Cellular Component	Cul5-RING ubiquitin ligase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10612	CUL5; cullin 5	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.