Gene detail

Detailed information of g25091.t1.1 in Astreopora myriophthalma

Genomic Location: :...
NR annotation: CAH3153762.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

g25091.t1

ATGTATTCATCTCGTGTGGCCGATAAACTAGGCCCCAACATTTATGAAGAGCGTGCAGGCGGTATATTCACTCCAAGCTGCCATCGTTATAACAATGACTCGGTGACAAATACAACAAGCGTCAAATCCGGAAAATGTAATGTGACGACCACATCACCCGGGTTGCTCGCGTGCAAAAAGGTATTATTCAAGGCTCCTTTCATTAGCGGCCAAGAAATCAAGGTTCTGGCTTCAAAGAGCCATTCTGTGAAAGGCGCAACTCGCGGCAACGGCGCTGCTGTCTGGATTGAGTCAGCCAATAATAAGGGATTTATAGCTTGTGTTCTGGAGTATGGAGATGGTTCCAATGGCACCACAGAAGTAAACTGGATCGCTTTGCAAACACCACCTGCCGGTTCTCAAATAGGGACCACTTCCTTAAGCCCATGGACTACAGGGACGCAGTGTAAAAGAATAGCTTTCCATAAGCCTTTCTCAGCTCCTCCAAAGATATTTGTGACCGCCAGTCATCAGAGACCTCAAGATGCCTCAGCTGTGTGGGTGAAGAACTTACGAATGGGTGGTTTTCAGATTTGTGTCAGAGAAATTAAGATTTTTGGTGGTCTTCACAAAAACGTCGAAGTGGACTGGCTTGCATTGACCGATCTGAGGATTGATAACTTTACCATGACAGACAGTCTTCTGTTTATGAAGAGCAACTGGTCATCTCAGCAAGATAACGACACTCTCTGTCGAaaaatcaaattcaaagatCCATTTTTCGCTCCTCCTGTGGTCATAGTGTCACCAACTAATGGCTATGACTATAATAAGTCTATAACCGGATGCAATGCATTCACAGCGTGGGTGGAGtaTACATCCATAAGCGATACTGAAGTGTGTGTAACAAGTCTCAGCAGAACTGCTATCAGTGGGGGGACACAGAGAATGGATTACTTGGTGATTGGAGGTGGGTACAAATCTAATCACAAGGATCCTATATATGATGGTCACCACAGTTATAGACCTTATGACGAACCTTTTATCCTGGATTTGCATCCATGCCTTGTGGTGACATGTCATTATCATGGTCTATGTAAGGCTTTTGGACCTTACGATGCACGCTGTGTGTGTAGGGAAGACTGTCCGTCCTACCAGGAGCCCGTATGTTCGTCCAACGGTACAACATACGACAACAAATGTTTTTTCAAGAAGGAAATGTGTCTGCTACAACTCAACTTTACTGTGCAACATCCTGGAAGCTGTGAAGGGTTTCCTTTTCAACATGGCCGCGTTCACATGCCCTACATTCCTACCCTTGGATATTATCATTGCGAGAGAGTTCATTTCCGGCCTTTTGTATTTTATCCTGACAAAGCCATTGAAGTGCAAATCACCGTCAATCATGTGGATACCAATGACAAGTCTTATGTCCATGATGCAGCTGTGTCGTGGGCTGAGAAAATGGATTCTGATGGGTTCACTGCGTGCGTTATGGCTGCGGGATTTGGTGAACGAAAGTCAAATGCCAATGTGACGGTTGATTGGATGGCGTACCAAGGAGCGCCGATGGGTGGTGTTACTGGGGAGGTGCGCTTGTCACAATGGTGGACCGGTACGACGTGTGAGACAGTGAAATTCCCGGCAGGGAAATTGACCGGCAAGCCTTCAGTGTTTGTCACCGCCAAGCATCACAATCCAGGACTGAAGCGTGATGCGGCCAGTGTCTGGATTGAAGATGTCACGCCATCAACCTGTCAAATTTGCTTGATGGAATTGCAAAATTATGCAGGATCACACAAAGATATCCATGTTAATTGGTTGGCGTTTTCGTATCTTGACAAGCCTCCTTTTTCAGAACACAACTCGATCCACTTTCTGAACGATCAGCCTCCTTTGGCAGGCCACAACAATGCGTTTTGCAAGGATGCTAGTTTCGTAAAGACTTACAAGACAACTCCACTCGTATTTGTTGCCGCTAATCATTCATCGAAAAAGGGGAACCAAAGTCCGATTCACAACAGTGTGTCTGCTTGGGTAGAGTACATCAATACAACTGGCTTCCGTGTATGTAGCAAAGAATTGTATGAAGTAAAATATGATCCACTGTCCATATCGTTTATGGTTTTGTCAGATATCTGTAGGCCTGGATGGGCCTTTTTCGATGGATTTTGCTACTTTACAAGTTCTGAATGTGCGCCGTGGTTAACAGCTGTGTCGAACTGTTCGGCGATTGGTTCTCATCTGGTGACAGTTCATAACCAGGAAGAAAATGTCTACATACAACATCGCCATAGCGGGGAGACTTCATGGATTGGATTGAATGATCGGAGTGTAGAAGGATCTTTTGTTTGGGCAAGCAAAGAAATAAGCAAGTTTAAATCCTGGGCTCCGCAGCAaccaaacaactggaaaaacgAGGATTGTGTGCACACTCTTGGAGCTAACAATGGATACAGATGGAACGATGTATCTTGCGATGAGTGCCACAACTTTACTTGTATGAAAGACGTTGACGAGTGCACCACTAATTACCACAGATGTGATGTAAATGCTGTTTGTGCTAATACTGTGGGATCATACATTTGCAAGTGCAAAGCTGGATACTCTGGAGATGGAAAGAATTGTACCGGTAAGTGA

Transcript

g25091.t1

Protein

Uniprot

Uniprot term	Description
Q61361	Brevican core protein OS=Mus musculus OX=10090 GN=Bcan PE=1 SV=2
P55068	Brevican core protein OS=Rattus norvegicus OX=10116 GN=Bcan PE=1 SV=2
Q96GW7	Brevican core protein OS=Homo sapiens OX=9606 GN=BCAN PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07645	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF07648	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan
PF00059	Lectin_C	Lectin C-type domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002350	Domain	Kazal domain	Interproscan
IPR001304	Domain	C-type lectin-like	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR036058	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR049883	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR051004	Family	Dendritic cell-specific ICAM-grabbing non-integrin domain-containing protein	Interproscan
IPR037221	Homologous_superfamily	H-type lectin domain superfamily	Interproscan
IPR018378	Conserved_site	C-type lectin, conserved site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22802	C-TYPE LECTIN SUPERFAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0009897	Cellular Component	external side of plasma membrane	Interproscan
GO:0030246	Molecular Function	carbohydrate binding	Interproscan
GO:0044419	Biological Process	biological process involved in interspecies interaction between organisms	Interproscan