Gene detail

Detailed information of g2515.t1 in Montipora capitata

Genomic Location: Sc0000038:757049...794990
NR annotation: XP_029211608.2, protein PTHB1-like [Acropora millepora]
Species abbreviation MCAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g2515.t1

atgtcgctgttcaaagcgagagattggtgggcaacctacgctggcagtgatgaagaatttgaccgaggatgcttgtgtgtagccaacatagacaacaattcatcaccctttgataagattatcgtaggtagctatcatggaatacttcgaatttattgcccaaagccgccgagttttaaaccggatgatctcatgttggaagtgcagctacaacaacctatcttacaagttgagtcagggagatttgtgtcgggggtggatcaacttcacctagctattctccatccaagaaagcttgctgtctacaatgtagcagtcatttctggagctgttgaacatggaaaccattacacccttacaatggtctatgagcacattttggaaagaagtgcttataatatgacttatgggccttttggaggagtcagaaacaaagactatacgtgtgtacagtccatggatggtatgttgtcattctttgaacaagagagttatgcctttgggagatttcttcctgggtttctgctaccaggtcccctcagttatgttgcaaagacagattccttcctaacggtcagctcatcaaggcttgtggaatcttacaaatatcagactctagcagttgcaactgatgctaatacaaaagaagacattggaaacaaaaaagtatcaggaaagaaactaacgatggactggtcatcaaatattggtgaacatgcagttgacatttttgtttttagcagttcgaatgcacctctttcaatatttattctaggagaacgctcactgttttgtcttagtgacactggatcagtgaggttcatgaaaaagtttgaatacaacccaagctgtttcattccttataattcagttttggaaggagcagtgaatattctcatggccacatttaataagacactgatgatatatcaggatgtgacactagcttgggcagcacagcttccacatattcccgttgcagtcaaagtggcatcgttccaagaactgaaaggtgtgatagtgactttggatgagacggggtaccttcactgtgcttatctaggaacagatccctcaatgatggtgacaccagcacctgaatctagagacattaattatgaagaagccgatcttgaaatgaagcaacttcagaaagaaatcaaggaatccacactaagctcagaaatcttaccaagggcacagcagaaagaagatcttttaatttccgttcatgttcctccaagtttggactcggtttctcaaagttcggtaaatgatggtgacgaggacctgtttccctcaattactgtcacgatcaccctcaagtcgcaagctcctagtccacttgaaaatgttgtcctcagtgtcatttctagtccgcctatcatgtgcaacagatcctcaatagtatttcccataatcggtgacagaagtgaacctgtgtctgcagaggtgtcattctactctcgaggaggatccattccgagttccttgaaagctcagatcacagccacctatcttacaaactcagaggccccgcgaatcgctcaaacagatattaacttccctatgaatgttgtctgcaaatgctgcccacccatgaagaatgcaaatcataagataactgtagataccaacaaacctccagtaaatctcgctgagatattttcagatatggtgaatgacgctgttattccgatggcggcaattggcatacagtactttggcggaccagtggttaccattctcgcttcgaaaacctcacagagatacagaatacaatgtgacgtgtttcaaggaatgtggctcattctttacgagctgtgtaaacgactcgaggcacattacaagaaaagcaaggactctgttccatttcgcctgtcttttatgggtccgttaccgctgcaagaatattacgaactcatagatgcacactttgagcaacgccttaaccaaacaaaataccgcgagctgttggcacagcgggctcaacaatttcgaacgatccaaagaagactgttgacaagattcaaggacaaaaccccagcaccacttgcaaacctcgatactttactggatggcacttatagacagctcttagcgcttggcgaggccgaggaggagtgtgaacgaggaattgaagcggccgcgagtaacttatcctgcgggacacgactggtgaattttcttatcaagttatggacgaatatgtctgacaaagacttcgaagttcttcaaagtgccctctcccctgaggtttctgagtcagaagatcagggctgggaagaaatcacagacgctgccattacgcacctattgcggacctgtctggccaaaagtgccaaggaccaagcagtgggtatttctgggatgaaaattcccaaggatactagcaagctgaaaaaacacattgcgctaatgtgtgatagacttaataagggaagcaagttagacttgtcatctcaacttggggaaccccttgtacaacagcaacaacagaaggctgtggcccccctggaaccacttagcgaaatgcaggaagaagatgatgaaacagatggttcgtcttctaccaccgacgaaagccgttcctctgaaatctccgacacggagtcggtaacgagtaacagcagcggcaagcaccgagctcgcctaccgcagcttaatcatgccaaaaaaccgctaccagacttcaacaaacgagtcttagtgaatccggggtctgaagaggaaagcatggtgctgaaaggaattggtgaagcagccatgacgaatggcttgtctgagggtcatgaaagggcgttgtaa

Transcript

g2515.t1

ATGTCGCTGTTCAAAGCGAGAGATTGGTGGGCAACCTACGCTGGCAGTGATGAAGAATTTGACCGAGGATGCTTGTGTGTAGCCAACATAGACAACAATTCATCACCCTTTGatAAGATTATCGTAGGTAGCTATCATGGAATACTTCGAATTTATTGCCCAAAGCCGCCGAGTTTTAAACCGGATGATCTCATGTTGGAAGTGCAGCTACAACAACCTATCTTACAAGTTGAGTCAGGGAGATTTGTGTCGGGGGTGGATCAACTTCACCTAGCTATTCTCCATCCAAGAAAGCTTGCTGTCTACAATGTAGCAGTCATTTCTGGAGCTGTTGAACATGGAAACCATTACACCCTTACAATGGTCTATGAGCACATTTTGGAAAGAAGTGCTTATAATATGACTTATGGGCCTTTTGGAGGAGTCAGAAACAAAGACTATACGTGTGTACAGTCCATGGATGGTATGTTGTCATTCTTTGAACAAGAGAGTTATGCCTTTGGGAGATTTCTTCCTGGGTTTCTGCTACCAGGTCCCCTCAGTTATGTTGCAAAGACAGATTCCTTCCTAACGGTCAGCTCATCAAGGCTTGTGGAATCTTACAAATATCAGACTCTAGCAGTTGCAACTGATGCTAATACAAAAGAAGACATTGGAAACAAAAAAGTATCAGGAAAGAAACTAACGATGGACTGGTCATCAAATATTGGTGAACATGCAGttgacatttttgtttttagcagTTCGAATGCACCTCTTTCAATATTTATTCTAGGAGAACGCTCACTGTTTTGTCTTAGTGACACTGGATCAGTGAGGTTCATGAAAAAGTTTGAATACAACCCAAGCTGTTTCATTCCTTATAATTCAGTTTTGGAAGGAGCAGTGAATATTCTCATGGCCACATTTAATAAGACACTGATGATATATCAGGATGTGACACTAGCTTGGGCAGCACAGCTTCCACATATTCCCGTTGCAGTCAAAGTGGCATCGTTCCAAGAACTGAAAGGTGTGATAGTGACTTTGGATGAGACGGGGTACCTTCACTGTGCTTATCTAGGAACAGATCCCTCAATGATGGTGACACCAGCACCTGAATCTAGAGACATTAATTATGAAGAAGCCGATCTTGAAATGAAGCAACTTCAGAAAGAAATCAAGGAATCCACACTAAGCTCAGAAATCTTACCAAGGGCACAGCAGAAAGAAGATCTTTTAATTTCCGTTCATGTTCCTCCAAGTTTGGACTCGGTTTCTCAAAGTTCGGTAAATGATGGTGACGAGGACCTGTTTCCCTCAATTACTGTCACGATCACCCTCAAGTCGCAAGCTCCTAGTCCACTTGAAAATGTTGTCCTCAGTGTCATTTCTAGTCCGCCTATCATGTGCAACAGATCCTCAATAGTATTTCCCATAATCGGTGACAGAAGTGAACCTGTGTCTGCAGAGGTGTCATTCTACTCTCGAGGAGGATCCATTCCGAGTTCCTTGAAAGCTCAGATCACAGCCACCTATCTTACAAACTCAGAGGCCCCGCGAATCGCTCAAACAGATATTAACTTCCCTATGAATGTTGTCTGCAAATGCTGCCCACCCATGAAGAATGCAAATCATAAGATAACTGTAGATACCAACAAACCTCCAGTAAATCTCGCTGAGATATTTTCAGATATGGTGAATGACGCTGTTATTCCGATGGCGGCAATTGGCATACAGTACTTTGGCGGACCAGTGGTTACCATTCTCGCTTCGAAAACCTCACAGAGATACAGAATACAATGTGACGTGTTTCAAGGAATGTGGCTCATTCTTTACGAGCTGTGTAAACGACTCGAGGCACATTACAAGAAAAGCAAGGACTCTGTTCCATTTCGCCTGTCTTTTATGGGTCCGTTACCGCTGCAAGAATATTACGAACTCATAGATGCACACTTTGAGCAACGCCTTAACCAAACAAAATACCGCGAGCTGTTGGCACAGCGGGCTCAACAATTTCGAACGATCCAAAGAAGACTGTTGACAAGATTCAAGGACAAAACCCCAGCACCACTTGCAAACCTCGATACTTTACTGGATGGCACTTATAGACAGCTCTTAGCGCTTGGCGAGGCCGAGGAGGAGTGTGAACGAGGAATTGAAGCGGCCGCGAGTAACTTATCCTGCGGGACACGACTGGTGAATTTTCTTATCAAGTTATGGACGAATATGTCTGACAAAGACTTCGAAGTTCTTCAAAGTGCCCTCTCCCCTGAGGTTTCTGAGTCAGAAGATCAGGGCTGGGAAGAAATCACAGACGCTGCCATTACGCACCTATTGCGGACCTGTCTGGCCAAAAGTGCCAAGGACCAAGCAGTGGGTATTTCTGGGATGAAAATTCCCAAGGATACTAGCAAGCTGAAAAAACACATTGCGCTAATGTGTGATAGACTTAATAAGGGAAGCAAGTTAGACTTGTCATCTCAACTTGGGGAACCCCTTgtacaacagcaacaacagaaGGCTGTGGCCCCCCTGGAACCACTTAGCGAAATGCAGGAAGAAGATGATGAAACAGATGGTTCGTCTTCTACCACCGACGAAAGCCGTTCCTCTGAAATCTCCGACACGGAGTCGGTAACGAGTAACAGCAGCGGCAAGCACCGAGCTCGCCTACCGCAGCTTAATCATGCCAAAAAACCGCTACCAGACTTCAACAAACGAGTCTTAGTGAATCCGGGGTCTGAAGAGGAAAGCATGGTGCTGAAAGGAATTGGTGAAGCAGCCATGACGAATGGCTTGTCTGAGGGTCATGAAAGGGCGTTGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6AX60	Protein PTHB1 OS=Xenopus laevis OX=8355 GN=bbs9 PE=2 SV=1
Q811G0	Protein PTHB1 OS=Mus musculus OX=10090 GN=Bbs9 PE=1 SV=2
Q3SYG4	Protein PTHB1 OS=Homo sapiens OX=9606 GN=BBS9 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005351 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14727 all species →	PHTB1_N	PTHB1 N-terminus	Repeat	Interproscan
PF14728 all species →	PHTB1_C	PTHB1 C-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028073 all species →	Domain	PTHB1, N-terminal domain	Interproscan
IPR026511 all species →	Family	Parathyroid hormone-responsive B1	Interproscan
IPR028074 all species →	Domain	PTHB1, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20991 all species →	PARATHYROID HORMONE-RESPONSIVE B1 GENE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0034464 all species →	Cellular Component	BBSome	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19398	BBS9; Bardet-Biedl syndrome 9 protein	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.