Gene detail

Detailed information of g25152.t1 in Acropora digitifera

Genomic Location: chr12Alt:2217551...2239287
NR annotation: XP_029193513.2, trafficking protein particle complex subunit 10-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g25152.t1

ATGGACTTAAAACCAAAAGTCACTTGCTGCGGCAATAAAGATGTTCACAATAGCCTTAACCTAGAGCTTGAGAGGAGATTGCCAATAGAGTCTACAGAGTGGAGAAGATCTTATGGAAGACCTCCTAAGACTGTCAAGCTAAAAGCACATTTTGTACGGTTTTCTCAAGACTTGTTGGTTGATGTTGGTAACTTGGAAATGTATCAGTCTGCATCAAGCCTTCACAGGCGGCCGTTTCTCCATATATACTGGACAGACTGTCAGGATCCTGATGAATTCAAAAGCACAGTGAAAGACGGAATAACAGACTGGATGAGAAGGTTGAAAGACAAGAATATTGTTGATTGGATGATCATCCAGGTTATATCTCAAGACTCAGTGAGAGGAAGCAAACCGAAGATTCCAATTCCTCGAAGCTCTGTGTTTGACAAAATAAAAAGCGACTTTGGGGGCAAGAACAGTGAAAGGATAATTCAGTTATGGGAACCCTTTAAAGAAAATCCATCCCCACGAACATTGGAATCTTGGCAAAGTTTGGTTGTGAAACTGCGATATCTACTGTTGTTGTCACTGAATCGTCATCTGGGCAAATTTGAAGACCAAGTTAGGTCATTGAGGGAAAAAAGAACAGAACCAAACTGGAGTTTCACTACATACTTTCTACTCCATGAAGAGTTGTCATTTGTATTTGAGATGCTGGGTCTGTATGAAGAAGCTCTGATTCAATATGATGAGATTGATGCTCTTCTCACCCAACTTGTCATCAACTCACATTTTGGTGAACCCCTGGACTGTATAGAAGTCTTCATGCGTGACTGCAAGTGCTGTGATGGAGTCTCCTTAGAAAAAGGCTCCCAAGAATACTTGCGCCAACAAATAAAAACAGAAGAAGCAAACTATGTGGACCTTAGAAATTATCTCTTTTCCAGACAATGTAAGCTGCTATTAAAATTTAAGACAAATTCTCCTTGGGAAATCGCTCAGCGGACATTGGAATTCCTCCACAATTTGAAACATGAATTGGCAATGGAAACCGTCAAGGTATCCTTGCCAAAAGGTGGAGCTTCATGTTTTGTTTTCTTAACTGCTCTTGAAGTTTTGAAAGCCTGTGAGAATGAAGATAATGATACTGCAATGGCCTTTAGTCTGGACTTTGCACTTCTCTACCAGTATGCGCGTGAAAAGCTCGATGACCTTGGTAATCTGTGTGGCTTGATGCCTGGTTCCAGTCCTACTGAAACAGAACTACAGACGGTGTGCATGCTGCAATCGAGCATTGGAAAAATGCAAGGAGAAGATATTGAGTCTAATGTGCCGGCAAAGAGACTTCACAACGCTCTCTCTTCAACACGTGCCTTCGAGTCATTGTACCTGGAATTAACAGGGACGGCTATTACAACCTATAAGAACATTGGACGCGCCAGAGCAGCCAATGTGCTTGGAATGGACCTGGCTCATTTTTATTCTTACCGTGGAGACCTGGAGCGCGCCGAGCAACTCCTTTGTGAAGCATACAAGGTATACAAGCACGAGAGATGGACCCTTCTGGCAACCAAGTGCCTGGTGAAACTCGCGCAATGTCAAAAGCAGTTGAGGCACATGGACCAGTATGCCTCAGCTTGTTCAATTTTGGCCTGCGAACAGCATCTCTCATCCGAAGAAAGGTCACACTACACTCAAGAGTTATTACAAGTTATGAGAGAAACTATGGATTCAGAGAAAGTGATAATTGTTCGAGCTGAACCACTGTTGCGAGTGCAAGATGTGCAGATTGAACTGATGAAAGGAATTGGCAGCGTTGGAGAATCTATCATTGTTAAGCTTAAACTGTTAAGCTCCTTGGAGGAGGAAGTTAGTTGCAGACGAATAAGCTTTAGTATCCAAACCAACGAGCTGAAGCGCGTGGGAAGCATTCGCTCGAGTAAAAGAATGCGCGCAACATCTCCGCCTGACGTGGAAGACGGGCTCTCATCGGCCGCGTTATCGGAAGAAGATTTGTCAGATAAACCGGAAGGCCAACCCACAGAGGGAGAAGGTTTCAGTGACGATGGCAGAGAGACAATTCCCTGTCCTCTGGTCCCCAAACGTCCGGAGATAAAGAGCTCAGAGGAGCTTTCTGTGTTGTCCGCAAATGAAGATAGCGAAGAATGTTGCCTTCAGTGCTTTAACGTACCACTTAAACATGGAGTCAATGAATATAACCTCACAGCTCAGTTGGCCGAAGAGGGACATTACTACCTGAAGCAGCTTTGTGTTGAGATTGGCAGACTCGATTACGTGTGGCCACAGCTGTCCTTACCGGGGCAGTCTAAGGGCTTTGCCATAGTGGATGATCCACCAAGAATAAACTGGAGTCTTCCTCAAGAGCTTCATCTCTTAGCTGGTCTCCCGCAGGAGGTGACCCTCAGCATCTCGGTTGAACCAGGTTCCATAGCAAACGGTTCTGTCTTAGAAATCACCTCACAGAAGAAAGGTCTCATTTTCGAACCGATCTCATCAGGGGAGGCAGTCATAAATTCCTCGATGGACAAGCAAGACATTAGCAGAACAGCACCTTACAGCGTCCGAGTACCGGCAGCACAAGACCATGAGGAGGACGCCACCGATATCACGGTTGCTATGGTTACGCTGCCAGCGGTGGGTCCGTACGCTAAGATCGATTTCAAGTTGATCTTAAACGCCTCGCTGGAGAAACAGAGCGCACAAGAGGAAGTAACGGAATATTTGCTTACGTTTAATTGTAAGTGGCTATCTCCTGAGGTGACGGCAGACCTGTCGTGTTCGTTTCACCGTCCATTCACTGTGCGTCATGTTCTCCATTCTTCTGAAATCAGCCGTTTTTTGCAAGTATTAGTCAGCGGCATAAATCCAGTAGATTTGGTAATCCACTCACCTGATTTGATCGTCACCAACTGTTCTTCAGTCGAGTTGACACCATTACACCGGGACAGCGAATATGTGATTGTTGAGCAACAAGATATGTCATTTTTATGGAAGATTGAGGGCGGAGAAGGTTCATTTACTGAGTTGGATTGTGAATTTCGAGCCTCATTTTCACCAAAACAAGCTGCAGCTAAGCCTTCACTCTTGTCATCCCAACAGCGGAGAATCTTCCTGTACGACTTTCGTATAGTCAACACTCAGACTTTATACACCATAAGCTCGAAAATTGAGTCTCTCGAAGAGTCATGTGACCTATTCGCGGGCTCGACATACAAGTGGCACATAACCTTCACTCGTTTGACGAGTCCTCCGAATGAATCCGACCCTTGTCAGTTGCTTTACGATGTGGATACCGACACGAATACTTGGGCTGTCAGCGGACGTAAAAGCGGTGTCGTGTCGATACCTCGTGTTTCTATGGCAACTTCGGACGTTGTTCTAAACGTTATCCCGCAGACAGGTGGGCATCTTGCGATGCCAGCGATAAAATTAATGAAGTATCTCGATAAAGACGAACAATTACAAGAGAAGGACTTAGACGCGCCCGCGAAATTGAATGCGTCTGGAACGCGAGAAAGCCGTGATGTTCCTCTGGTTTTACCGTTTTCTTGTGGGCAAGTTTATAACAAATCTCTTGCTGTCAGAGTTTGCGTTTTACCAAACAATAACACTGACCAGCATTGA

Transcript

chr12Alt.g25152.t1

AACGAGACGCATTTTAAATAAGATCGTCATGGACTTAAAACCAAAAGTCACTTGCTGCGGCAATAAAGATGTTCACAATAGCCTTAACCTAGAGCTTGAGAGGAGATTGCCAATAGAGTCTACAGAGTGGAGAAGATCTTATGGAAGACCTCCTAAGACTGTCAAGCTAAAAGCACATTTTGTACGGTTTTCTCAAGACTTGTTGGTTGATGTTGGTAACTTGGAAATGTATCAGTCTGCATCAAGCCTTCACAGGCGGCCGTTTCTCCATATATACTGGACAGACTGTCAGGATCCTGATGAATTCAAAAGCACAGTGAAAGACGGAATAACAGACTGGATGAGAAGGTTGAAAGACAAGAATATTGTTGATTGGATGATCATCCAGGTTATATCTCAAGACTCAGTGAGAGGAAGCAAACCGAAGATTCCAATTCCTCGAAGCTCTGTGTTTGACAAAATAAAAAGCGACTTTGGGGGCAAGAACAGTGAAAGGATAATTCAGTTATGGGAACCCTTTAAAGAAAATCCATCCCCACGAACATTGGAATCTTGGCAAAGTTTGGTTGTGAAACTGCGATATCTACTGTTGTTGTCACTGAATCGTCATCTGGGCAAATTTGAAGACCAAGTTAGGTCATTGAGGGAAAAAAGAACAGAACCAAACTGGAGTTTCACTACATACTTTCTACTCCATGAAGAGTTGTCATTTGTATTTGAGATGCTGGGTCTGTATGAAGAAGCTCTGATTCAATATGATGAGATTGATGCTCTTCTCACCCAACTTGTCATCAACTCACATTTTGGTGAACCCCTGGACTGTATAGAAGTCTTCATGCGTGACTGCAAGTGCTGTGATGGAGTCTCCTTAGAAAAAGGCTCCCAAGAATACTTGCGCCAACAAATAAAAACAGAAGAAGCAAACTATGTGGACCTTAGAAATTATCTCTTTTCCAGACAATGTAAGCTGCTATTAAAATTTAAGACAAATTCTCCTTGGGAAATCGCTCAGCGGACATTGGAATTCCTCCACAATTTGAAACATGAATTGGCAATGGAAACCGTCAAGGTATCCTTGCCAAAAGGTGGAGCTTCATGTTTTGTTTTCTTAACTGCTCTTGAAGTTTTGAAAGCCTGTGAGAATGAAGATAATGATACTGCAATGGCCTTTAGTCTGGACTTTGCACTTCTCTACCAGTATGCGCGTGAAAAGCTCGATGACCTTGGTAATCTGTGTGGCTTGATGCCTGGTTCCAGTCCTACTGAAACAGAACTACAGACGGTGTGCATGCTGCAATCGAGCATTGGAAAAATGCAAGGAGAAGATATTGAGTCTAATGTGCCGGCAAAGAGACTTCACAACGCTCTCTCTTCAACACGTGCCTTCGAGTCATTGTACCTGGAATTAACAGGGACGGCTATTACAACCTATAAGAACATTGGACGCGCCAGAGCAGCCAATGTGCTTGGAATGGACCTGGCTCATTTTTATTCTTACCGTGGAGACCTGGAGCGCGCCGAGCAACTCCTTTGTGAAGCATACAAGGTATACAAGCACGAGAGATGGACCCTTCTGGCAACCAAGTGCCTGGTGAAACTCGCGCAATGTCAAAAGCAGTTGAGGCACATGGACCAGTATGCCTCAGCTTGTTCAATTTTGGCCTGCGAACAGCATCTCTCATCCGAAGAAAGGTCACACTACACTCAAGAGTTATTACAAGTTATGAGAGAAACTATGGATTCAGAGAAAGTGATAATTGTTCGAGCTGAACCACTGTTGCGAGTGCAAGATGTGCAGATTGAACTGATGAAAGGAATTGGCAGCGTTGGAGAATCTATCATTGTTAAGCTTAAACTGTTAAGCTCCTTGGAGGAGGAAGTTAGTTGCAGACGAATAAGCTTTAGTATCCAAACCAACGAGCTGAAGCGCGTGGGAAGCATTCGCTCGAGTAAAAGAATGCGCGCAACATCTCCGCCTGACGTGGAAGACGGGCTCTCATCGGCCGCGTTATCGGAAGAAGATTTGTCAGATAAACCGGAAGGCCAACCCACAGAGGGAGAAGGTTTCAGTGACGATGGCAGAGAGACAATTCCCTGTCCTCTGGTCCCCAAACGTCCGGAGATAAAGAGCTCAGAGGAGCTTTCTGTGTTGTCCGCAAATGAAGATAGCGAAGAATGTTGCCTTCAGTGCTTTAACGTACCACTTAAACATGGAGTCAATGAATATAACCTCACAGCTCAGTTGGCCGAAGAGGGACATTACTACCTGAAGCAGCTTTGTGTTGAGATTGGCAGACTCGATTACGTGTGGCCACAGCTGTCCTTACCGGGGCAGTCTAAGGGCTTTGCCATAGTGGATGATCCACCAAGAATAAACTGGAGTCTTCCTCAAGAGCTTCATCTCTTAGCTGGTCTCCCGCAGGAGGTGACCCTCAGCATCTCGGTTGAACCAGGTTCCATAGCAAACGGTTCTGTCTTAGAAATCACCTCACAGAAGAAAGGTCTCATTTTCGAACCGATCTCATCAGGGGAGGCAGTCATAAATTCCTCGATGGACAAGCAAGACATTAGCAGAACAGCACCTTACAGCGTCCGAGTACCGGCAGCACAAGACCATGAGGAGGACGCCACCGATATCACGGTTGCTATGGTTACGCTGCCAGCGGTGGGTCCGTACGCTAAGATCGATTTCAAGTTGATCTTAAACGCCTCGCTGGAGAAACAGAGCGCACAAGAGGAAGTAACGGAATATTTGCTTACGTTTAATTGTAAGTGGCTATCTCCTGAGGTGACGGCAGACCTGTCGTGTTCGTTTCACCGTCCATTCACTGTGCGTCATGTTCTCCATTCTTCTGAAATCAGCCGTTTTTTGCAAGTATTAGTCAGCGGCATAAATCCAGTAGATTTGGTAATCCACTCACCTGATTTGATCGTCACCAACTGTTCTTCAGTCGAGTTGACACCATTACACCGGGACAGCGAATATGTGATTGTTGAGCAACAAGATATGTCATTTTTATGGAAGATTGAGGGCGGAGAAGGTTCATTTACTGAGTTGGATTGTGAATTTCGAGCCTCATTTTCACCAAAACAAGCTGCAGCTAAGCCTTCACTCTTGTCATCCCAACAGCGGAGAATCTTCCTGTACGACTTTCGTATAGTCAACACTCAGACTTTATACACCATAAGCTCGAAAATTGAGTCTCTCGAAGAGTCATGTGACCTATTCGCGGGCTCGACATACAAGTGGCACATAACCTTCACTCGTTTGACGAGTCCTCCGAATGAATCCGACCCTTGTCAGTTGCTTTACGATGTGGATACCGACACGAATACTTGGGCTGTCAGCGGACGTAAAAGCGGTGTCGTGTCGATACCTCGTGTTTCTATGGCAACTTCGGACGTTGTTCTAAACGTTATCCCGCAGACAGGTGGGCATCTTGCGATGCCAGCGATAAAATTAATGAAGTATCTCGATAAAGACGAACAATTACAAGAGAAGGACTTAGACGCGCCCGCGAAATTGAATGCGTCTGGAACGCGAGAAAGCCGTGATGTTCCTCTGGTTTTACCGTTTTCTTGTGGGCAAGTTTATAACAAATCTCTTGCTGTCAGAGTTTGCGTTTTACCAAACAATAACACTGACCAGCATTGACTCATGTCGAGAAGCGACTATCGTTACATCTTTTAAGCCGATCTAAACGCGCAACGAACATGCGAATGTTGACAGTTGATTGCTTATGATTAGGTTAAATTAGGTGGAAAAAGCGCTCTCTCATAGCTCATCTCAGACAAAAAGTTTACTGTGGTGTTGTCCTATTATCGTTTGAGGTATGAGTAAAGGGATACACAGAATCATCACTTCGCGGTTTTGGGTCGAATTCGTATAATAAATACTTTCTTGAAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P48553	Trafficking protein particle complex subunit 10 OS=Homo sapiens OX=9606 GN=TRAPPC10 PE=1 SV=2
Q3TLI0	Trafficking protein particle complex subunit 10 OS=Mus musculus OX=10090 GN=Trappc10 PE=1 SV=3
Q9VFB7	Trafficking protein particle complex subunit 10 OS=Drosophila melanogaster OX=7227 GN=SIDL PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12584 all species →	TRAPPC10	Trafficking protein particle complex subunit 10, TRAPPC10	Family	Interproscan
PF14938 all species →	SNAP	Soluble NSF attachment protein, SNAP	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR022233 all species →	Domain	TRAPP II complex TRAPPC10, C-terminal	Interproscan
IPR045126 all species →	Family	Trafficking protein particle complex subunit TRAPPC10/Trs130	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13251 all species →	EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006891 all species →	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0034498 all species →	Biological Process	early endosome to Golgi transport	Interproscan
GO:0048193 all species →	Biological Process	Golgi vesicle transport	Interproscan
GO:1990071 all species →	Cellular Component	TRAPPII protein complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20307	TRAPPC10, TRS130; trafficking protein particle complex subunit 10	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g25152.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

50.3Max TPM

25.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	25.89	50.30

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	50.30
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	50.18
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	40.07
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	34.97
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	34.09
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	32.22
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	32.06
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	31.86
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	29.73
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	28.50
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	28.41
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	27.37
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	27.28
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	27.10
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	26.74
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	26.66
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	26.07
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	24.20
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	23.98
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	23.76
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	23.72
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	22.51
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	22.18
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	21.80
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	21.59
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	21.53
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	21.52
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	21.37
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	21.33
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	21.03
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	20.93
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	20.24
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	19.79
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	18.86
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	18.63
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	17.97
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	17.53
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	17.47
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	14.15

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.