Gene detail

Detailed information of g2519.t1 in Montipora capitata

Genomic Location: Sc0000038:826389...837936
NR annotation: XP_044183546.1, LOW QUALITY PROTEIN: BTB/POZ domain-containing protein 7-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g2519.t1

atgggtgcaactgcatctgcagagcaggcctcgcctgactcaaccttgctccgagtgccacgttacactttagaagagaagcgaaagaaatcttccaagctcaacacactcaggaagaaactaacaaggagtaaaagtacttttaaaaaccatgatcatggaaagatgttgcgggaattaacacagacttggacaacacaagagattaatgctcttgttgaggaatacgaggctatgatgaatgtcaaagacttgaaaaaccagacaaatcttgtgcgttcatctgcttcgtgcctgaaaaaggatcttggaaagttgtttgaagaggacatttgctcggattgcactcttgtttttgaagacactagttttcgtgttcatagagctattctttcatcaaggtgtccttactttagggagcttttctcacaacatacagaggaacatcccgtcattcacatggaatttaaaacagagggaatgtccaaagaaattttctcagcgcttctttgctacttatacactggagattttacccccaagaaatctggtttggaatacatagatgttttaatcaatcttggcgatgaattcggaacaccaaatgttctggaacaggatttcaaagtactctttaactgtggggaatatgctgatgttgtgcttgtttttcctggggaggattcaacagacacgtacccatcacaagatggtggcacaatttccagccaaagttatgagattttgtgtcacaagtccatactttgtgcacggtcacaatattttagatcactttttttgaaaagtaacatgaattcatttgagcaggcagcaacaaattctagggtacaccgacttgttatagatgaatctgtaatgacgaggcaatatgccaggatagcgctgcaatgcatgtatacagactctgtggatttgtcgtctgttgtcaagtggagctcagaggacaaaggatattactctcctgggactcataaactgcttactcttgcagaaattgctatggaggtctttgaagtagcaagcttcattgatttgcctgttctcatacaaggctgtgaagacatcatcctagaagagttgtcaccatcgacacttcttcccaccctggagtggagttccctcccgcatggctcggattgggtctacagacaggccatgcagttcctgcaggacgagtttgtaaatattgcacaatctgatgtttttccctttatgccgaggaagtatctagtggaggcattgaaatctgattttctgcaggccagtgaacatgatgtgttgctgtctgttattagatggggtgaagcacaggttcttcgaaccatgaatgaacaagatctgttccaagaaaacaagaaaagtactaaaaggcgcgaagttgacaccaaacaactgaagagagtgttgtcgggtgtgattgagcatgtgcgaatgggtcacgtgattccaacccacagcgaggtcttggagggagtgtttcgcagaggtcttgctgatcggggcatgccacttgacataggagagggaagtttttatcccaatttaccgtggatgagaagacgacaagagaaggattttgttcgaccaagactcttcttgccttactgtgaggaggcgaagatcatccttcgagaacacagagaagccgagaaagagcttcagagacaccgcacgtcacgcgtcacgcaaaacatgccagacacactgtacatgatagagccacagaaacgcagaaacacggcaccatcattttttctggccgctgcagctgcggcgagaatggaacgagaagagcgcatgtctacgtcccagatttcaaaggcggaggagaacgagttggatcgatatgtgagagctcggcgcgcaagccagatgtccttgggttcaggcgaaagagaatcagttgggtccgataaggtggccgagagggaattggctctcccagacgttgctatggaattgccaacgtgtgtcccagatgatcattgcgggcagagatctggaccttccaggattcatcttcttgaagcaggggtaaccttggaaactacacgttaa

Transcript

g2519.t1

ATGGGTGCAACTGCATCTGCAGAGCAGGCCTCGCCTGACTCAACCTTGCTCCGAGTGCCACGTTACACTTTAGAAGAGAAGCGAAAGAAATCTTCCAAGCTCAACACACTCAGGAAGAAACTAACAAGGAGTAAAAGTACTTTTAAAAACCATGATCATGGAAAGATGTTGCGGGAATTAACACAGACTTGGACAACACAAGAGATTAATGCTCTTGTTGAGGAATACGAGGCTATGATGAATGTCAAAGACTTGAAAAACCAGACAAATCTTGTGCGTTCATCTGCTTCGTGCCTGAAAAAGGATCTTGGAAAGTTGTTTGAAGAGGACATTTGCTCGGATTGCACTCTTGTTTTTGAAGACACTAGTTTTCGTGTTCATAGAGCTATTCTTTCATCAAGGTGTCCTTACTTTAGGGAGCTTTTCTCACAACATACAGAGGAACATCCCGTCATTCACATGGAATTTAAAACAGAGGGAATGTCCAAAGAAATTTTCTCAGCGCTTCTTTGCTACTTATACACTGGAGATTTTACCCCCAAGAAATCTGGTTTGGAATACATAGATGTTTTAATCAATCTTGGCGATGAATTCGGAACACCAAATGTTCTGGAACAGGATTTCAAAGTACTCTTTAACTGTGGGGAATATGCTGATGTTGTGCTTGTTTTTCCTGGGGAGGATTCAACAGACACGTACCCATCACAAGATGGTGGCACAATTTCCAGCCAAAGTTATGAGATTTTGTGTCACAAGTCCATACTTTGTGCACGGTCACAATATTTTAGATCACTTTTTTTGAAAAGTAACATGAATTCATTTGAGCAGGCAGCAACAAATTCTAGGGTACACCGACTTGTTATAGATGAATCTGTAATGACGAGGCAATATGCCAGGATAGCGCTGCAATGCATGTATACAGACTCTGTGGATTTGTCGTCTGTTGTCAAGTGGAGCTCAGAGGACAAAGGATATTACTCTCCTGGGACTCATAAACTGCTTACTCTTGCAGAAATTGCTATGGAGGTCTTTGAAGTAGCAAGCTTCATTGATTTGCCTGTTCTCATACAAGGCTGTGAAGACATCATCCTAGAAGAGTTGTCACCATCGACACTTCTTCCCACCCTGGAGTGGAGTTCCCTCCCGCATGGCTCGGATTGGGTCTACAGACAGGCCATGCAGTTCCTGCAGGACGAGTTTGTAAATATTGCACAATCTGATGTTTTTCCCTTTATGCCGAGGAAGTATCTAGTGGAGGCATTGAAATCTGATTTTCTGCAGGCCAGTGAACATGATGTGTTGCTGTCTGTTATTAGATGGGGTGAAGCACAGGTTCTTCGAACCATGAATGAACAAGATCTGttccaagaaaacaagaaaagtaCTAAAAGGCGCGAAGTTGACACCAAACAACTGAAGAGAGTGTTGTCGGGTGTGATTGAGCATGTGCGAATGGGTCACGTGATTCCAACCCACAGCGAGGTCTTGGAGGGAGTGTTTCGCAGAGGTCTTGCTGATCGGGGCATGCCACTTGACATAGGAGAGGGAAGTTTTTATCCCAATTTACCGTGGATGAGAAGACGACAAGAGAAGGATTTTGTTCGACCAAGACTCTTCTTGCCTTACTGTGAGGAGGCGAAGATCATCCTTCGAGAACACAGAGAAGCCGAGAAAGAGCTTCAGAGACACCGCACGTCACGCGTCACGCAAAACATGCCAGACACACTGTACATGATAGAGCCACAGAAACGCAGAAACACGGCACCATCATTTTTTCTGGCCGCTGCAGCTGCGGCGAGAATGGAACGAGAAGAGCGCATGTCTACGTCCCAGATTTCAAAGGCGGAGGAGAACGAGTTGGATCGATATGTGAGAGCTCGGCGCGCAAGCCAGATGTCCTTGGGTTCAGGCGAAAGAGAATCAGTTGGGTCCGATAAGGTGGCCGAGAGGGAATTGGCTCTCCCAGACGTTGCTATGGAATTGCCAACGTGTGTCCCAGATGATCATTGCGGGCAGAGATCTGGACCTTCCAGGATTCATCTTCTTGAAGCAGGGGTAACCTTGGAAACTACACGTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CFE5	BTB/POZ domain-containing protein 7 OS=Mus musculus OX=10090 GN=Btbd7 PE=2 SV=1
Q9P203	BTB/POZ domain-containing protein 7 OS=Homo sapiens OX=9606 GN=BTBD7 PE=1 SV=3
Q717B2	TD and POZ domain-containing protein 2 OS=Mus musculus OX=10090 GN=Tdpoz2 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006311 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00651 all species →	BTB	BTB/POZ domain	Domain	Interproscan
PF07707 all species →	BACK	BTB And C-terminal Kelch	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR000210 all species →	Domain	BTB/POZ domain	Interproscan
IPR042345 all species →	Family	BTB/POZ domain-containing protein 7	Interproscan
IPR011705 all species →	Domain	BTB/Kelch-associated	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16064 all species →	BTB POZ DOMAIN CONTAINING 7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0061138 all species →	Biological Process	morphogenesis of a branching epithelium	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10479	BTBD7; BTB/POZ domain-containing protein 7	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g2519.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

159.3Max TPM

50.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	52.17	159.33
whole organisms · low pH treatment	15	15	46.13	137.29
whole organisms · extra low pH treatment pH treatment	12	12	51.85	140.05

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	159.33
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	152.56
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	136.57
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	117.80
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	112.19
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	60.76
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	45.67
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	43.48
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	29.60
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	27.72
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	27.61
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	27.31
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	24.00
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	23.08
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	22.34
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	18.19
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	17.84
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	16.06
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	14.48
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	10.07
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	8.99
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	137.29
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	125.57
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	112.54
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	73.19
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	47.84
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	40.92
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	21.01
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	20.75
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	20.68
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	19.08
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	19.04
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	18.66
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	14.30
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	10.96
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	10.11
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	140.05
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	124.48
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	112.53
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	65.18
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	52.99
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	26.05
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	25.01
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	21.77
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	16.48
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	13.53
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	12.41
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	11.77

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.