Gene detail

Detailed information of g25253.t2 in Acropora digitifera

Genomic Location: chr12Alt:3481186...3496651
NR annotation: XP_029187076.2, ralBP1-associated Eps domain-containing protein 1-like isoform X1 [Acropora millepora]
Species abbreviation ADIGI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g25253.t2

ATGAACCGAACTTTACTTGTTGAGGAAGGAGATGATGAGGTCAATAACAGACAAGATAAAAAGAAAAAAGAAAAGGAGAAGCTTGCAGATGTTACAGATAAAAAGAAAAGAGGTACCTTTAAAAAAGCTGACGGTAAAAGGGAAGGTCACCACAACACCTCCTTAACAAGTTCTTCTAAAATTATGCCAGCAGATGACATGGCTGATATGGCTGCAGTGAATCCAAATGCAGAGGCAATGTCTTCTCCCGTGGGGACACCTGTGGTGCCATCTCCTTTTGCTGCCCCTGTTTCGGGGGGTTACCAGGGAAACATGGTCATCATTCCACCACAGAGGCCAATCACGTTACAGCAACTACCGACTCAAAATGTTACGCAAAGAGAGGCTGGCAACTGGGGGCCGCAACAACAGTATCCAATAACTGGATTTGCGGTACCACTACAGCAGCCGCAAGCTCAGTTGCATTGCCAAGCACCCATGGCCCATTTTATTCCAGCAAATTTCCAAGGCACATCGCAACCTCTTCAGCAAGTACAAGGGCAATTTGTTCCTCCGAAATATCATCAAGCACCTCAGTACCCAACTGGGAGTGGTATGCCTCTGCAGGGTGGTTTTTATAGTGGCCAAGCAGTTCCAGGCAATGCTCACGGAATGACTGCAGCACAGTCTTTACCAACGTCAACCTCGTTAGCAGTTGAACAGACCCACAGTTCTGGCCAGGCATCATGGGCAGCAACAGCGACACCTGCCAGTCCACCACCATTTGGTAGTGGGGATTCCTCATGGACAAATCGGCCCATGTCTGAACCCAGAGAGGAAAGAGCTTGGAAAGATGACAACAAACCTACTTCCAACAGTGGTGGAGCCAACGACAGGCAGTGGGCTGAATTCTCACCTACAGAATCGTCAACTGAAATGTCAAGTTCATTGAAGGACGAACTTTACGAGGAGCACAGCTCCAGTGATGAAGATGTTGACCGCAGCAGCTCACCAGAGCTGGCAGGTGAAGAAGGGGAAGTGCTTCTGAGGGCTCCATCACTGGCCAGTTTTGCGGAAAGTATCAGCAGCATTGAGGAAGAATCAGAAGAGAACTTATGGCGCATTTTGCCAGAACAGAGAGATTATTATACTAAGCAGTTCCAAAAACTGCAGCCTGTACAAGGTGGATTGGTTAAAGGCCCCAAAGCAAGAGACTTCTTCATGAAGTCAGGATTACCTGTTGAAGTGCTTTCAAGAATATGGCACCTGTCGGATATAAACAAGGATAATGCCCTTAATCTGGATGAATTTTGCATTGCAATGCACCTTGTGGTAGCATTACGGCATGGATTTGAATTGCCGGAAACCCTTCCGACGATCTTGATGCCACACTGGAAAGAAACAGCTGTCAAAGCCTCCTCTCATTCACTTGCAGCTCTTCAAGGAAAGGTAGAGGGAAATGGAGAACATGAAACGAGGAGTGTGTCATCGCCAGATCACGGTTCTGTTCAACCAGTCCATCAGAGAGATGAGGCAAAGCTTGATGAAGTCGGCGATGTCGATAATGATGATGATGATGATGATGATGATGATGATGATGACGATAACAGTACTGGAAGACAAAGGTCACTGTCTGATCCCTTATCAGTTGAGGATTCTTCAGACGGGAAGTATCGCAGGGCAAGTGTCCCTGCCAGTCCGTTAAGGCCGTTGAACTTTGCTTTGCCGTCCAGTTCATCCCAGCAAATTGAGACCGGGCCATTAAGTCCGAGCCAAGCGGTAACCGCGGAAATAGAGATCGCTAGACCACGGGCAACGGTGAAGCCTAGCTTGCTCGATGCTCTTCCGGGTCAGCTGCTCCCGCCACCCTCGGGAAAACAAACGCGCGATGGATGGACACCCACCAGCAAGACCACGTTTATTTACCAAGCGTCACCTCACCACACAGACGGGTTGTCTTCTGATGCGCTCTCCACACCTCCATCCTCCCCTGATGAGGATACGCCAACATCGCCTCTCTCCCCTGACAACCGGAAAACGCCCTCACCTCCCCCTCCCGAAGCGCCTAAGGCGGATGAAGAGGAGCCCCCTAAGGAAGACCCCGAGAAGGTGGTGGTTGTCCGCCCGAGCAGGAAAAGTGCAGAGAGGCCCAGGTCAACCGGAGATGTAAACAGTAGTCTTCAAAGTGAAGCGAATTCACCACGGTCGCCCGGAGGGGATGGAAGTCAGAGCTCCGCTTCTTCTGACGGACGCAAGGAACCTCCGCCTCCTCCCCCGAGAAACAAGAAAGGGCACTCAAGGTCATCATCACTGGATTTAAACAAACTCTTTGCTACTAAAAGCAAGGAGAACAGAGGTACACCTCCATCATCATCTTCAAGTCATTCAAGCCAGATTGGTGAGAGCGTAATTCCTGCTAAGGTTGAACCTTGTTCGCCTGAAAACGAAGATGATAATTCTAACAGCAGTGATGCTGTGGACACGGAGAGCGTCAAGCTCCAAAAACAGGAAAATTTCGCAGACTTCAGCAGATTCGAAAGTTTTGTGGAAGCGCAAGAAACAGTTGTTGATGACGAAGACAAAAAAGATATGCCGCAACCCAAGCCGCTTCATAGAAGGTCGCTTTCTTTGGATGATGCCCAGGACGTTGCTTGGTCAAAGCCGCAGCAAAAAAATCCCAGTGAAGCTGCCACAACACTTTCGAGAACACCTCATAATCAAGAGGCTCTACCCAGGCCAGTTCCCAAATTGAAACCTCCAAGTCCACCGACTCTGAAACAGGGACGACTTAGAACGGACAAAGACGGAGAAAAAGAAAGAAAACTTAAAACAGAACCACCAAAAGTTGTGGTCAGACCTTTAACTAAAGAAGACAAATTAAATTCGAGAATACAAGATTTAAAAGAAAAGAATGCTGCCCTCTCAAAAGTCAATTATGAACTCCAAGAGGAACTCAAATCGATAATGGAAAGACGAGCGACGCTGGAACTCCAATTGGAAAAAAAGAAGTCTCCCTCGTCTTAG

Transcript

chr12Alt.g25253.t2

ACTGACAGTTGAGGGGACGTACCTTGTCGAAAAATATTTCAGCAGTGACTGATATTTCAGCTATGAACCGAACTTTACTTGTTGAGGAAGGAGATGATGAGGTCAATAACAGACAAGATAAAAAGAAAAAAGAAAAGGAGAAGCTTGCAGATGTTACAGATAAAAAGAAAAGAGGTACCTTTAAAAAAGCTGACGGTAAAAGGGAAGGTCACCACAACACCTCCTTAACAAGTTCTTCTAAAATTATGCCAGCAGATGACATGGCTGATATGGCTGCAGTGAATCCAAATGCAGAGGCAATGTCTTCTCCCGTGGGGACACCTGTGGTGCCATCTCCTTTTGCTGCCCCTGTTTCGGGGGGTTACCAGGGAAACATGGTCATCATTCCACCACAGAGGCCAATCACGTTACAGCAACTACCGACTCAAAATGTTACGCAAAGAGAGGCTGGCAACTGGGGGCCGCAACAACAGTATCCAATAACTGGATTTGCGGTACCACTACAGCAGCCGCAAGCTCAGTTGCATTGCCAAGCACCCATGGCCCATTTTATTCCAGCAAATTTCCAAGGCACATCGCAACCTCTTCAGCAAGTACAAGGGCAATTTGTTCCTCCGAAATATCATCAAGCACCTCAGTACCCAACTGGGAGTGGTATGCCTCTGCAGGGTGGTTTTTATAGTGGCCAAGCAGTTCCAGGCAATGCTCACGGAATGACTGCAGCACAGTCTTTACCAACGTCAACCTCGTTAGCAGTTGAACAGACCCACAGTTCTGGCCAGGCATCATGGGCAGCAACAGCGACACCTGCCAGTCCACCACCATTTGGTAGTGGGGATTCCTCATGGACAAATCGGCCCATGTCTGAACCCAGAGAGGAAAGAGCTTGGAAAGATGACAACAAACCTACTTCCAACAGTGGTGGAGCCAACGACAGGCAGTGGGCTGAATTCTCACCTACAGAATCGTCAACTGAAATGTCAAGTTCATTGAAGGACGAACTTTACGAGGAGCACAGCTCCAGTGATGAAGATGTTGACCGCAGCAGCTCACCAGAGCTGGCAGGTGAAGAAGGGGAAGTGCTTCTGAGGGCTCCATCACTGGCCAGTTTTGCGGAAAGTATCAGCAGCATTGAGGAAGAATCAGAAGAGAACTTATGGCGCATTTTGCCAGAACAGAGAGATTATTATACTAAGCAGTTCCAAAAACTGCAGCCTGTACAAGGTGGATTGGTTAAAGGCCCCAAAGCAAGAGACTTCTTCATGAAGTCAGGATTACCTGTTGAAGTGCTTTCAAGAATATGGCACCTGTCGGATATAAACAAGGATAATGCCCTTAATCTGGATGAATTTTGCATTGCAATGCACCTTGTGGTAGCATTACGGCATGGATTTGAATTGCCGGAAACCCTTCCGACGATCTTGATGCCACACTGGAAAGAAACAGCTGTCAAAGCCTCCTCTCATTCACTTGCAGCTCTTCAAGGAAAGGTAGAGGGAAATGGAGAACATGAAACGAGGAGTGTGTCATCGCCAGATCACGGTTCTGTTCAACCAGTCCATCAGAGAGATGAGGCAAAGCTTGATGAAGTCGGCGATGTCGATAATGATGATGATGATGATGATGATGATGATGATGATGACGATAACAGTACTGGAAGACAAAGGTCACTGTCTGATCCCTTATCAGTTGAGGATTCTTCAGACGGGAAGTATCGCAGGGCAAGTGTCCCTGCCAGTCCGTTAAGGCCGTTGAACTTTGCTTTGCCGTCCAGTTCATCCCAGCAAATTGAGACCGGGCCATTAAGTCCGAGCCAAGCGGTAACCGCGGAAATAGAGATCGCTAGACCACGGGCAACGGTGAAGCCTAGCTTGCTCGATGCTCTTCCGGGTCAGCTGCTCCCGCCACCCTCGGGAAAACAAACGCGCGATGGATGGACACCCACCAGCAAGACCACGTTTATTTACCAAGCGTCACCTCACCACACAGACGGGTTGTCTTCTGATGCGCTCTCCACACCTCCATCCTCCCCTGATGAGGATACGCCAACATCGCCTCTCTCCCCTGACAACCGGAAAACGCCCTCACCTCCCCCTCCCGAAGCGCCTAAGGCGGATGAAGAGGAGCCCCCTAAGGAAGACCCCGAGAAGGTGGTGGTTGTCCGCCCGAGCAGGAAAAGTGCAGAGAGGCCCAGGTCAACCGGAGATGTAAACAGTAGTCTTCAAAGTGAAGCGAATTCACCACGGTCGCCCGGAGGGGATGGAAGTCAGAGCTCCGCTTCTTCTGACGGACGCAAGGAACCTCCGCCTCCTCCCCCGAGAAACAAGAAAGGGCACTCAAGGTCATCATCACTGGATTTAAACAAACTCTTTGCTACTAAAAGCAAGGAGAACAGAGGTACACCTCCATCATCATCTTCAAGTCATTCAAGCCAGATTGGTGAGAGCGTAATTCCTGCTAAGGTTGAACCTTGTTCGCCTGAAAACGAAGATGATAATTCTAACAGCAGTGATGCTGTGGACACGGAGAGCGTCAAGCTCCAAAAACAGGAAAATTTCGCAGACTTCAGCAGATTCGAAAGTTTTGTGGAAGCGCAAGAAACAGTTGTTGATGACGAAGACAAAAAAGATATGCCGCAACCCAAGCCGCTTCATAGAAGGTCGCTTTCTTTGGATGATGCCCAGGACGTTGCTTGGTCAAAGCCGCAGCAAAAAAATCCCAGTGAAGCTGCCACAACACTTTCGAGAACACCTCATAATCAAGAGGCTCTACCCAGGCCAGTTCCCAAATTGAAACCTCCAAGTCCACCGACTCTGAAACAGGGACGACTTAGAACGGACAAAGACGGAGAAAAAGAAAGAAAACTTAAAACAGAACCACCAAAAGTTGTGGTCAGACCTTTAACTAAAGAAGACAAATTAAATTCGAGAATACAAGATTTAAAAGAAAAGAATGCTGCCCTCTCAAAAGTCAATTATGAACTCCAAGAGGAACTCAAATCGATAATGGAAAGACGAGCGACGCTGGAACTCCAATTGGAAAAAAAGAAGTCTCCCTCGTCTTAGCGGTTTAAAAAGCCAATTTATGACAGTTATTGAGCGAAGAAAAAAATTATGGAATTTCTACCTTCAATTCCGACTTCATTTGAAATCTTTCTCACGCCGGACTGAATAACTCGCGCTTCTGACAAGTGTTCAAACATGCAAGCAAAACGTATTATTTTGTTCGTCTAGAACAGTTTTAGAAGTACCTAGCCGCATATTTGTTTTACTTGCGTTTTTTATCCACTTTTAGACGCTTGAAACGGGTCCTTTATTCTTTTCTTTGAATCGGTGTTGTGTGAGAGAGAAATTCGTCAAGCAAAGAAAATAAAGTTTTGTATAAGTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q60902	Epidermal growth factor receptor substrate 15-like 1 OS=Mus musculus OX=10090 GN=Eps15l1 PE=1 SV=3
Q9UBC2	Epidermal growth factor receptor substrate 15-like 1 OS=Homo sapiens OX=9606 GN=EPS15L1 PE=1 SV=1
P42566	Epidermal growth factor receptor substrate 15 OS=Homo sapiens OX=9606 GN=EPS15 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12763 all species →	EF-hand_4	Cytoskeletal-regulatory complex EF hand	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000261 all species →	Domain	EH domain	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11216 all species →	EH DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0016197 all species →	Biological Process	endosomal transport	Interproscan
GO:0042734 all species →	Cellular Component	presynaptic membrane	Interproscan
GO:0060090 all species →	Molecular Function	molecular adaptor activity	Interproscan
GO:0097708 all species →	Cellular Component	intracellular vesicle	Interproscan
GO:0150007 all species →	Biological Process	clathrin-dependent synaptic vesicle endocytosis	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20068	REPS; RalBP1-associated Eps domain-containing protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.