Detailed information of g253.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MCG8336451.1, TraR/DksA family transcriptional regulator [Pseudomonadota bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q71X99ATP-dependent helicase/nuclease subunit A OS=Listeria monocytogenes serotype 4b (strain F2365) OX=265669 GN=addA PE=3 SV=1
Q8Y511ATP-dependent helicase/nuclease subunit A OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) OX=169963 GN=addA PE=3 SV=1
Q929A9ATP-dependent helicase/nuclease subunit A OS=Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262) OX=272626 GN=addA PE=3 SV=1
Gene familySubfamily
Transcription Factors FamilyRHD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF15508NAAA-betabeta subunit of N-acylethanolamine-hydrolyzing acid amidaseFamilyInterproscan
PF02275CBAHLinear amide C-N hydrolases, choloylglycine hydrolase familyDomainInterproscan
PF19745FUT8_N_catAlpha-(1,6)-fucosyltransferase N- and catalytic domainsDomainInterproscan
PF00554RHD_DNA_bindRel homology DNA-binding domainDomainInterproscan
PF06159DUF974Protein of unknown function (DUF974)FamilyInterproscan
PF20519Polycystin_domPolycystin domainDomainInterproscan
PF08016PKD_channelPolycystin cation channelFamilyInterproscan
PF01477PLATPLAT/LH2 domainDomainInterproscan
PF00580UvrD-helicaseUvrD/REP helicase N-terminal domainDomainInterproscan
PF12705PDDEXK_1PD-(D/E)XK nuclease superfamilyDomainInterproscan
PF13361UvrD_CUvrD-like helicase C-terminal domainDomainInterproscan
PF14580LRR_9Leucine-rich repeatRepeatInterproscan
PF00612IQIQ calmodulin-binding motifMotifInterproscan
PF00293NUDIXNUDIX domainDomainInterproscan
PF00615RGSRegulator of G protein signaling domainDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF01258zf-dskA_traRProkaryotic dksA/traR C4-type zinc fingerFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR029130DomainAcid ceramidase, N-terminalInterproscan
IPR029132DomainCholoylglycine hydrolase/NAAA C-terminalInterproscan
IPR016699FamilyAcid ceramidase-likeInterproscan
IPR045573DomainAlpha-(1,6)-fucosyltransferase, N- and catalytic domainInterproscan
IPR027350DomainGlycosyltransferase family 23 (GT23) domainInterproscan
IPR008366FamilyNuclear factor of activated T cells (NFAT)Interproscan
IPR014756Homologous_superfamilyImmunoglobulin E-setInterproscan
IPR008967Homologous_superfamilyp53-like transcription factor, DNA-binding domain superfamilyInterproscan
IPR011539DomainRel homology domain, DNA-binding domainInterproscan
IPR037059Homologous_superfamilyRel homology domain (RHD), DNA-binding domain superfamilyInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR010378FamilyTrafficking protein particle complex subunit 13Interproscan
IPR046791DomainPolycystin domainInterproscan
IPR013122DomainPolycystin cation channel, PKD1/PKD2Interproscan
IPR000434FamilyPolycystic kidney disease type 1 proteinInterproscan
IPR001024DomainPLAT/LH2 domainInterproscan
IPR036392Homologous_superfamilyPLAT/LH2 domain superfamilyInterproscan
IPR051223FamilyPolycystinInterproscan
IPR014016DomainUvrD-like helicase, ATP-binding domainInterproscan
IPR011335Homologous_superfamilyRestriction endonuclease type II-likeInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR014017DomainUvrD-like DNA helicase, C-terminalInterproscan
IPR000212FamilyDNA helicase, UvrD/REP typeInterproscan
IPR011604Homologous_superfamilyPD-(D/E)XK endonuclease-like domain superfamilyInterproscan
IPR038726DomainPD-(D/E)XK endonuclease-like domain, AddAB-typeInterproscan
IPR000048Binding_siteIQ motif, EF-hand binding siteInterproscan
IPR001611RepeatLeucine-rich repeatInterproscan
IPR032675Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan
IPR015797Homologous_superfamilyNUDIX hydrolase-like domain superfamilyInterproscan
IPR000086DomainNUDIX hydrolase domainInterproscan
IPR047016FamilyRegulator of G protein signaling 6/7/9/11Interproscan
IPR016137DomainRGS domainInterproscan
IPR024066Homologous_superfamilyRGS, subdomain 1/3Interproscan
IPR044926Homologous_superfamilyRGS, subdomain 2Interproscan
IPR036305Homologous_superfamilyRGS domain superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR020458Conserved_siteZinc finger, DksA/TraR C4-type conserved siteInterproscan
IPR000962DomainZinc finger, DksA/TraR C4-typeInterproscan
IPR037187Homologous_superfamilyDksA, N-terminal domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR28583ACID AMIDASEInterproscan
PTHR13132ALPHA- 1,6 -FUCOSYLTRANSFERASEInterproscan
PTHR23112G PROTEIN-COUPLED RECEPTOR 157-RELATEDInterproscan
PTHR12533NFATInterproscan
PTHR13134UNCHARACTERIZEDInterproscan
PTHR10877POLYCYSTIN FAMILY MEMBERInterproscan
PTHR11070UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBERInterproscan
PTHR15454NISCHARIN RELATEDInterproscan
PTHR12629DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASEInterproscan
PTHR45746LP21163PInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR33823RNA POLYMERASE-BINDING TRANSCRIPTION FACTOR DKSA-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005764Cellular ComponentlysosomeInterproscan
GO:0006631Biological Processfatty acid metabolic processInterproscan
GO:0017064Molecular Functionfatty acid amide hydrolase activityInterproscan
GO:0016810Molecular Functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bondsInterproscan
GO:0006487Biological Processprotein N-linked glycosylationInterproscan
GO:0036071Biological ProcessN-glycan fucosylationInterproscan
GO:0046921Molecular Functionalpha-(1->6)-fucosyltransferase activityInterproscan
GO:0004930Molecular FunctionG protein-coupled receptor activityInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0007189Biological Processadenylate cyclase-activating G protein-coupled receptor signaling pathwayInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0005667Cellular Componenttranscription regulator complexInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0008134Molecular Functiontranscription factor bindingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:1990072Cellular ComponentTRAPPIII protein complexInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005262Molecular Functioncalcium channel activityInterproscan
GO:0050982Biological Processdetection of mechanical stimulusInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0016787Molecular Functionhydrolase activityInterproscan
GO:0000725Biological Processrecombinational repairInterproscan
GO:0003678Molecular FunctionDNA helicase activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0033202Cellular ComponentDNA helicase complexInterproscan
GO:0043138Molecular Function3'-5' DNA helicase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0000298Molecular Functionendopolyphosphatase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0008486Molecular Functiondiphosphoinositol-polyphosphate diphosphatase activityInterproscan
GO:0034431Molecular Functionbis(5'-adenosyl)-hexaphosphatase activityInterproscan
GO:0034432Molecular Functionbis(5'-adenosyl)-pentaphosphatase activityInterproscan
GO:0050072Molecular Functionobsolete m7G(5')pppN diphosphatase activityInterproscan
GO:0071543Biological Processdiphosphoinositol polyphosphate metabolic processInterproscan
GO:1901907Biological Processdiadenosine pentaphosphate catabolic processInterproscan
GO:1901909Biological Processdiadenosine hexaphosphate catabolic processInterproscan
GO:1901911Biological Processadenosine 5'-(hexahydrogen pentaphosphate) catabolic processInterproscan
GO:0005096Molecular FunctionGTPase activator activityInterproscan
GO:0008277Biological Processregulation of G protein-coupled receptor signaling pathwayInterproscan
GO:0043547Biological Processpositive regulation of GTPase activityInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K13720NAAA; N-(long-chain-acyl)ethanolamine deacylaseEC:3.5.1.60
Ribosome biogenesisko03009deepkoala
Ion channelsko04040deepkoala
Signaling proteins-deepkoala
Peptidases and inhibitorsko01002deepkoala

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