Gene detail

Detailed information of g25317.t1 in Acropora digitifera

Genomic Location: chr12Alt:4242057...4247760
NR annotation: XP_044178628.1, ryncolin-1-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D8VNS7	Ryncolin-1 OS=Cerberus rynchops OX=46267 PE=1 SV=1
D8VNS8	Ryncolin-2 OS=Cerberus rynchops OX=46267 PE=1 SV=1
D8VNS9	Ryncolin-3 OS=Cerberus rynchops OX=46267 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00147 all species →	Fibrinogen_C	Fibrinogen beta and gamma chains, C-terminal globular domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050373 all species →	Family	Fibrinogen C-terminal domain-containing protein	Interproscan
IPR002181 all species →	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR014716 all species →	Homologous_superfamily	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Interproscan
IPR020837 all species →	Conserved_site	Fibrinogen, conserved site	Interproscan
IPR036056 all species →	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19143 all species →	FIBRINOGEN/TENASCIN/ANGIOPOEITIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0062023 all species →	Cellular Component	collagen-containing extracellular matrix	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10104	FCN; ficolin	-	Lectins	ko04091	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g25317.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

26TPM > 0

1Conditions

17.7Max TPM

3.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	26	3.78	17.71

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	17.71
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	10.61
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	9.70
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	9.53
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	9.37
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	8.67
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	8.21
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	7.97
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	7.45
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	5.89
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	5.40
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	5.13
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	5.08
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	3.89
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	3.75
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	3.73
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	3.20
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	3.18
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	3.18
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	3.00
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	2.94
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	2.81
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	2.60
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	2.56
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	1.13
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	0.67
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.