Gene detail

Detailed information of g25456.t1 in Montipora capitata

Genomic Location: Sc0003911:277...10400
NR annotation: XP_015773621.1, PREDICTED: serine--tRNA ligase, cytoplasmic-like [Acropora digitifera]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P26638	Serine--tRNA ligase, cytoplasmic OS=Mus musculus OX=10090 GN=Sars1 PE=1 SV=3
Q6P799	Serine--tRNA ligase, cytoplasmic OS=Rattus norvegicus OX=10116 GN=Sars1 PE=1 SV=3
P49591	Serine--tRNA ligase, cytoplasmic OS=Homo sapiens OX=9606 GN=SARS1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003530 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02403 all species →	Seryl_tRNA_N	Seryl-tRNA synthetase N-terminal domain	Domain	Interproscan
PF00587 all species →	tRNA-synt_2b	tRNA synthetase class II core domain (G, H, P, S and T)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015866 all species →	Domain	Serine-tRNA synthetase, type1, N-terminal	Interproscan
IPR002317 all species →	Family	Serine-tRNA ligase, type1	Interproscan
IPR045864 all species →	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan
IPR010978 all species →	Homologous_superfamily	Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm	Interproscan
IPR002314 all species →	Domain	Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)	Interproscan
IPR006195 all species →	Domain	Aminoacyl-tRNA synthetase, class II	Interproscan
IPR042103 all species →	Homologous_superfamily	Serine-tRNA synthetase, type1, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11778 all species →	SERYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004828 all species →	Molecular Function	serine-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006434 all species →	Biological Process	seryl-tRNA aminoacylation	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g25456.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.