Detailed information of g25558.t1 in Acropora digitifera

Genomic Location: chr12Alt:7270728...7279385
NR annotation: XP_044178462.1, coadhesin-like isoform X4 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q99715Collagen alpha-1(XII) chain OS=Homo sapiens OX=9606 GN=COL12A1 PE=1 SV=2
Q60847Collagen alpha-1(XII) chain OS=Mus musculus OX=10090 GN=Col12a1 PE=2 SV=3
B3EWZ8Ectin (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00090
all species →		TSP_1Thrombospondin type 1 domainDomainInterproscan
PF00092
all species →		VWAvon Willebrand factor type A domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050525
all species →		FamilyExtracellular Matrix Assembly and OrganizationInterproscan
IPR000884
all species →		RepeatThrombospondin type-1 (TSP1) repeatInterproscan
IPR002035
all species →		Domainvon Willebrand factor, type AInterproscan
IPR036465
all species →		Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR036383
all species →		Homologous_superfamilyThrombospondin type-1 (TSP1) repeat superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24020
all species →		COLLAGEN ALPHAInterproscan

 Gene Ontology
No Gene Ontology signature was detected for g25558.t1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for g25558.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP