Detailed information of g256.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: OGG94869.1, flagellar biosynthesis protein FlhF [Candidatus Lambdaproteobacteria bacterium RIFOXYD2_FULL_50_16]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q01960Flagellar biosynthesis protein FlhF OS=Bacillus subtilis (strain 168) OX=224308 GN=flhF PE=1 SV=1
O52908Flagellar biosynthesis protein FlhF OS=Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168) OX=192222 GN=flhF PE=3 SV=2
Q9ZM34Flagellar biosynthesis protein FlhF OS=Helicobacter pylori (strain J99 / ATCC 700824) OX=85963 GN=flhF PE=3 SV=1
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00665rveIntegrase core domainDomainInterproscan
PF00415RCC1Regulator of chromosome condensation (RCC1) repeatRepeatInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF00448SRP54SRP54-type protein, GTPase domainDomainInterproscan
PF13359DDE_Tnp_4DDE superfamily endonucleaseDomainInterproscan
PF00006ATP-synt_abATP synthase alpha/beta family, nucleotide-binding domainDomainInterproscan
PF07497Rho_RNA_bindRho termination factor, RNA-binding domainDomainInterproscan
PF07498Rho_NRho termination factor, N-terminal domainDomainInterproscan
PF00095WAPWAP-type (Whey Acidic Protein) 'four-disulfide core'DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007122FamilyVillin/GelsolinInterproscan
IPR029006Homologous_superfamilyADF-H/Gelsolin-like domain superfamilyInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR000408RepeatRegulator of chromosome condensation, RCC1Interproscan
IPR051553FamilyRan GTPase-activatingInterproscan
IPR009091Homologous_superfamilyRegulator of chromosome condensation 1/beta-lactamase-inhibitor protein IIInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR027145FamilyPeriodic tryptophan protein 2Interproscan
IPR020472RepeatG-protein beta WD-40 repeatInterproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR047040DomainFlagellar biosynthesis protein FlhF, GTPase domainInterproscan
IPR000897DomainSignal recognition particle, SRP54 subunit, GTPase domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR003593DomainAAA+ ATPase domainInterproscan
IPR020006FamilyFlagellar biosynthesis protein FlhFInterproscan
IPR027806DomainHarbinger transposase-derived nuclease domainInterproscan
IPR011113DomainRho termination factor, RNA-binding domainInterproscan
IPR041703DomainTranscription termination factor Rho, ATP binding domainInterproscan
IPR011112DomainRho termination factor, N-terminalInterproscan
IPR004665FamilyTranscription termination factor RhoInterproscan
IPR000194DomainATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR036269Homologous_superfamilyRho termination factor, N-terminal domain superfamilyInterproscan
IPR011129DomainCold shock domainInterproscan
IPR008197DomainWAP-type 'four-disulfide core' domainInterproscan
IPR036645Homologous_superfamilyElafin-like superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11977VILLINInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR45982REGULATOR OF CHROMOSOME CONDENSATIONInterproscan
PTHR19858WD40 REPEAT PROTEINInterproscan
PTHR43134SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHAInterproscan
PTHR23080THAP DOMAIN PROTEINInterproscan
PTHR46425TRANSCRIPTION TERMINATION FACTOR RHOInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0051015Molecular Functionactin filament bindingInterproscan
GO:0005546Molecular Functionphosphatidylinositol-4,5-bisphosphate bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0008154Biological Processactin polymerization or depolymerizationInterproscan
GO:0015629Cellular Componentactin cytoskeletonInterproscan
GO:0051014Biological Processactin filament severingInterproscan
GO:0051016Biological Processbarbed-end actin filament cappingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0005085Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000028Biological Processribosomal small subunit assemblyInterproscan
GO:0000462Biological Processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0032040Cellular Componentsmall-subunit processomeInterproscan
GO:0034388Cellular ComponentPwp2p-containing subcomplex of 90S preribosomeInterproscan
GO:0003924Molecular FunctionGTPase activityInterproscan
GO:0005525Molecular FunctionGTP bindingInterproscan
GO:0006614Biological ProcessSRP-dependent cotranslational protein targeting to membraneInterproscan
GO:0005047Molecular Functionsignal recognition particle bindingInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0006605Biological Processprotein targetingInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0044781Biological Processbacterial-type flagellum organizationInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0006353Biological ProcessDNA-templated transcription terminationInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0008186Molecular FunctionATP-dependent activity, acting on RNAInterproscan
GO:0005576Cellular Componentextracellular regionInterproscan
GO:0030414Molecular Functionpeptidase inhibitor activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14830MAK11, PAK1IP1; protein MAK11-Bacterial motility proteinsko02035deepkoala
Messenger RNA biogenesisko03019deepkoala
Ribosome biogenesisko03009deepkoala

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