Gene detail

Detailed information of g25701.t1 in Acropora digitifera

Genomic Location: chr12Alt:8737614...8747922
NR annotation: XP_029214015.1, eukaryotic translation initiation factor 2 subunit 3, Y-linked [Acropora millepora]
Species abbreviation ADIGI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr12Alt.g25701.t1

AGTGGGGCTTTCTGACCGCTGCCTCTTGCATCATCCGCCGCCATCTTGCTGATGAAGCTTATAAAGCATCCTTCTTTTGCCAGTTGAAGCTAGTAATCGCTAAACGATGGCTACAGACCATGCATTGGGACAACCTCATTTAGCCAAACAGGATTTATCGAAATTGACTGTAGAAGAGTTGAACCCCCTCACTCCTGAAGTAATAAGTAGGCAAGCAACGATAAACATCGGAACAATTGGTCACGTAGCTCATGGCAAATCTACAGTCGTCAAGGCATTATCGGGAGTTCAGACTGTTAGATTCAAAAATGAACTTGAGAGAAATATTACAATCAAGCTTGGATATGCCAATGCAAAGATTTACAAGTGCGATGGTAGTTCATGTCCTAGACCTGCCTGCTACCGCTCTGCAGGAAGTGCAAGGGAAGATGTCTTTCCATGTGAGAGAACGGGGTGTAATGGAAAGTTCAGGCTTGTTAGACATGTATCATTTGTTGATTGTCCAGGCCATGACATTCTTATGGCAACAATGTTGAATGGTGCTGCGGTGATGGATGCTGCTCTCTTACTAATTGCTGGAAATGAATCCTGCCCACAGCCACAAACATCAGAACATTTGGCAGCCATTGAAATAATGAAACTAAAACACATCATCATCCTGCAAAACAAGATAGACTTAGTAAAGGAAAGTCAGGCGAAAGAACAATACGATCAGATTCTTACATTTGTCAAAGGTACAATTGCAGAGGGTGCCCCAGTGGTCCCTATTTCAGCTCAGCTCAAGTACAACATTGAAGTTATATGTGAATTTATTTGCAAGAAGATTCCGGTTCCTGACAGAGATTTCTCCTCCAGTGCCAGACTAATAGTGATCAGGTCTTTTGACGTTAATAAGCCTGGATGTGAAGTGGAAGAACTTAAGGGTGGAGTAGCAGGAGGGAGCATTTTATGTGGAGTTTTAAAGGTCAGTCAAGAAATCGAAGTCAGACCTGGTATTGTATCCAAGGACAGTGAAGGCAAACTTCAGTGCCGTGCAATTTTTTCCCGAATCGTGTCTCTGTTTGCTGAACAGAACGACCTTCAGTTCGCTGTCCCTGGAGGACTTATTGGTGTTGGCACTAAGATTGATCCCACATTATGCAGAGCCGACAGAATGGTTGGTCAGGTTTTGGGTGCTGTGGGCACACTTCCCGAAATTTACACAGAGTTGGAAATCAGCTACTTTTTACTAAGAAGATTACTAGGAGTTAGGACTGAAGGGGACAAAAAAGGTGCCAAGGTACAAAAGTTATCAAAAAACGAAGTATTGATGGTTAACATTGGATCATTGTCGACCGGTGGACGGGTGTTGGCAGTCAAAGCAGATTTGGCCAAAATAGTATTGACTCAGCCTGTTTGTACAGAGACAGGAGAAAAAATCGCACTTAGTAGAAGAGTTGAGAAACATTGGAGGTTGATTGGTTGGGGTCAGATAAGACGTGGAGTTACCATAAGACCAGAATCCTGAAAACATAAATAATACTTACTTTCTTGACTTGATGTCCTTGACGTTCTCGATCAGCGTCTTGACATACTTCAGTGCTTGGCACGGCAGCTGTGCTCACTTTGAGCGATTAGATCAACATTCTGTGAAAGCTTGCTGATTAACACTGCTGTCTTGTTTTTTTTTATGTCCCTGCTCATTGAAACAAGAATTTGAATCAGCTTCTTTGTTCACCAAAGTTTAGGAGACCTATATTCTCGTCCAAACAGAGTTAACCAAATTCGGGACGTAGGGGCCCAAAAAATGAGAATCCAAGAGAGACCTTTCTCCAGGTACTTTTGGCCAATAAAAAGAGATAAAACAGTCGTTTAATTTTAATGCTTTATTTTAGCCTTTTTTTTTTTTTTTTTTTTAACTGAAGAAACTTCGATTTAGTTGGAAGGAGGCATGGCAAGCCCCTCAAGAATTGAACCTTGTTGATATTCACGAATTACCCGTCTTTGCAAAAACTCAGTGGAGTTCCTAATTGATGTCGCTTACAAGTAACTAATATTAAAAACTATTGTCTCCTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P20461	Eukaryotic translation initiation factor 2 subunit 3 OS=Sus scrofa OX=9823 GN=EIF2S3 PE=1 SV=2
C9WPN6	Eukaryotic translation initiation factor 2 subunit 3, Y-linked OS=Rattus norvegicus OX=10116 GN=Eif2s3y PE=2 SV=2
Q2KHU8	Eukaryotic translation initiation factor 2 subunit 3 OS=Bos taurus OX=9913 GN=EIF2S3 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03144 all species →	GTP_EFTU_D2	Elongation factor Tu domain 2	Domain	Interproscan
PF09173 all species →	eIF2_C	Initiation factor eIF2 gamma, C terminal	Domain	Interproscan
PF00009 all species →	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009000 all species →	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR015256 all species →	Domain	Initiation factor eIF2 gamma, C-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000795 all species →	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR050543 all species →	Family	Eukaryotic Initiation Factor 2 Gamma Subunit	Interproscan
IPR004161 all species →	Domain	Translation elongation factor EFTu-like, domain 2	Interproscan
IPR044128 all species →	Domain	Initiation factor eIF2 gamma, GTP-binding domain	Interproscan
IPR009001 all species →	Homologous_superfamily	Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal	Interproscan
IPR044127 all species →	Domain	Initiation factor eIF2 gamma, domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42854 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan
GO:0001731 all species →	Biological Process	formation of translation preinitiation complex	Interproscan
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0005850 all species →	Cellular Component	eukaryotic translation initiation factor 2 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03242	EIF2S3; translation initiation factor 2 subunit 3	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.