Gene detail

Detailed information of g2580.t1 in Acropora digitifera

Genomic Location: chr2Alt:2064656...2069414
NR annotation: XP_029212466.1, influenza virus NS1A-binding protein homolog [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr2Alt.g2580.t1

ATGTCTTGACTACTGCTTTGGTGTTAAACGCTGTTGTTGTTTGTGTTCCACATGCAGAGAGACCACACTTTGTGGTGTTTTCAAGTATTTGTCGCGGGGTTTAACAAGATTGACCAGACGCGCAAACTATCTTCGTGACATAAAGAATACGGAGATATAATATGATGCCTTCCAAAGAAAAGGAATCAGAGAAAATTGGTGGGTCAAGAAACGTGATGGTTACAGAACACCTATTATTCAAGAATGACCGCCATATTCGAAAGGTTTTCGAAGCTTTGAACGAACAACGTCAGACCGCGCGCTTCACAGATGCAATTCTTAAAGTTGGCCTCGCAGATATAAAACTCCACCGGTGTATTTTGGCCGCTGCGATCCCTAAACTACTTGAAAATCAGGATGGCGAAGATGAATCCCTCCTAACAGTGAAACTGGAAGGTGTGGATCCAAACGCCGTTGAAGTTTTAGTGGAGTTTGCTTACACAGGTGAGCTCAGCGTATCCGCTGGAGAAGTTCTTGGTCTTTATCATGCGGCGAAAAGTCTCGGGATGAAAGAAGTTCAAGACTCTTGTGAACAGTTCGTTCTTGACAAAGTTCTTCCATTGGACTGGATGGCTGTAAGGGGCTTTGCAGAGCAACAGGACTGTCCCAATTTGATGACTGCTGTCGATAAATTCATTGAGGAACATGTGGGAGATATCTATCACAAAAAAGATTTCTTTCAGTTGCCACGGTTGCAGATCGAGCTTGCTTCCACAAACGACAGGCAGAGGGAAAGTTTAGATTCCGAAAATCTTTGTAACGTTGCTATAAATTGGGCACATAAACAACTGGAGGAGGGAAACATTAATGTGAGGGGCTTACTTGAAAAGACCCACATCATGTTCCTAACAGCAGATGGTGAATTAAAGGAGTGCACATTGGAAGATCTTGATGCAGAGGATGAAAATTCCAAGCTCATCACCACAGAAGCTCAGCGTGAGTACATTCGCTACACTTCACTGGAGCAGCTCTCCAAAAAAGAAGTGAACAGCAGTGATGATGAAGAAAATCTGACTGAGCTTATCTTGCAAAAAAATAACAACAACAAGAAGAAACGGTCCTGGCTGGCAGAAAAAGACTTTCGCCTGATTGGTGCTGTTCAGAGCAGTGACAGTGCTTGTGCCGGCGTGGCAACAGTTGCAGGAGTATTGGTTGCAATATCAATTCACTCACAGACTCAGTCTAGTTGCAATAATTCAGACTCGGCAGATTTGTCAATGGGAGAAGATTGGGTACTTGTTGCCCCGATGAGTCGAGGCCGCTGTAGTGTAGGAGCAGTAGATCTGAATGGAAAACTGTATGCAGTTGGGGGCTATGACAGAGGTGACTGCCTCAACACAGTAGAACAGTATGACCCACAGCTTAATGAATGGATGCCTGTCTCTACAATGAACTCACCAAGGGGCCGACTGGGAGCTGAGGTGATAAATGGAAAGATTTATGCCATTGGCGGATCAAATGGCCATACAGAACTCAGTACAGTTGAAGTATTTGATGAAGCTTTGAATACCTGGAAGTTTGCACCGTCGATGCTTCAGTGTCGTTGTAGCTTTGGGACTGGAGTTGTCAATGGGCAAATATTTGCTGTTGGTGGATATGAAGGACCCAGAAACCTGAAAAGTGTTGAGGTGCATAATCCAGAAAAGAAAGAGTGGTCAAGAGTAGCACCAATGAACACAGAAAGAAATAACCTGTGTGTGGAGGTGTTAGACAACAAGCTTTATGCCATTGGTGGCTACAATGGGTGGACATGCTTCAACACTGTGGAATGTTATGACCCAGCAGAAGACCACTGGTTCTTTGTTCCACCAATGAAAACTCATCGTCGTGGTGCTGGTGCTGCTGTACTTCATGGCAAATTGTACGTGATTGGTGGCTCAGATGGAACTAATTTCTTAAACAGTGTTGAATGTTACGACCCCACCATCAATGAATGGAAAATTGTGGCAAGTCTCAACACCCCTCGCCACAATGTTGGGGCTGTTGCTATTGGAGACCACATCTATGCCGTTGGGGGTTTTGGTGCCTCATCCTTCCTGAAATCCATTGAGTACTATGATTTCAAGAGTGACAAATGGAACTGTTTTGTTCTTTAGACAATGATTTTGTCACAAACTATTCCAAGATTAGTTGCACTATTGGAGACTTTTATCATTATCCTCTGAGTGACTGTGATAACCTGTAAGAAACATTCACATTCAAAGTAACTTCTGATGGCACTTCAACTTACAATCTATCAAGTAGATGAAGATACATTATTTAATTTAAGTTATGTCACAGCATTTTGGTTTCATAGTTCTTATGTGTGTGACTCGCTAAAGATGTATATAATTTCTTATTTTGTTTGTGTGTTTTGACAAATAATATATTGCTTTTGTATGGGTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y6Y0	Influenza virus NS1A-binding protein OS=Homo sapiens OX=9606 GN=IVNS1ABP PE=1 SV=3
Q6DFU2	Influenza virus NS1A-binding protein homolog OS=Xenopus laevis OX=8355 GN=ivns1abp PE=2 SV=1
Q920Q8	Influenza virus NS1A-binding protein homolog OS=Mus musculus OX=10090 GN=Ivns1abp PE=1 SV=2

Gene family

Family type	Membership / link
Transcription factor family	ZBTB · all TF in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|BTB · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00651 all species →	BTB	BTB/POZ domain	Domain	Interproscan
PF01344 all species →	Kelch_1	Kelch motif	Repeat	Interproscan
PF07707 all species →	BACK	BTB And C-terminal Kelch	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR000210 all species →	Domain	BTB/POZ domain	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR017096 all species →	Family	BTB-kelch protein	Interproscan
IPR006652 all species →	Repeat	Kelch repeat type 1	Interproscan
IPR011705 all species →	Domain	BTB/Kelch-associated	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24412 all species →	KELCH PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15046	IVNS1ABP, NS1BP; influenza virus NS1A-binding protein	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.