Gene detail

Detailed information of g25816.t2 in Acropora digitifera

Genomic Location: chr12Alt:10110493...10115338
NR annotation: XP_029187261.2, probable cationic amino acid transporter [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr12Alt.g25816.t2

GAGTGATTTATTGGCTCTCTGAGGGAGCAAATTTAATTATGACTCTCATTTAGAGACGTTTTTAAGCAAAGGGAGGTTTCTAAAACCTTCATCAATTAGCCATATTGAAAACTGAAGACCCACTGGGAAGAATCGTTTTATAGTGCTTAGAGATCTTCAAAGATGACCATGCTTCGATTTCTTCGGCTTTTAACGCGACGAAAAGAAATCGACAACGACCTTTCAAACTCTCAGCTTCGCCGATGCCTTAACGTGTTTGATTTAACATCAATCGGGGTTGGAGCGACCGTGGGTGCAGGTTTGTACGTTGTAACAGGACAAATAGCGAGAGATGTTTCCGGGCCGGCCATCGTGTTGTCATTCTTCATTGCTGCCGTTGCTGCTTTTCTTTCTGGTATTTGCTACGCGGAGTTCGGCTGTCGGATAACCAAAGCTGGATCGGCCTACGTTTACATTTATTCTTCTCTTGGGGAAATATGGGCCTTTATAATCGGTTGGAACATGATCTTAGAGTATGTAATCGGAACAGCTTCACTTGGGCGAGCGAGCAGCGAGTACATCGACTCCATTGCCGGCGGAGTGATACGAAAGTTCTTCATTGACAACATTGGGAAAATCAGCGCTTCTGGTTTAGGCTCGTACCCCGATTTTTTGGCGTTCTTTCTTGTCCTTGCGGTTTCGTCCATCGTTGCTAGCGGGGCTAAACATTCCGCATTATTCAACAAATTTGTCACGACAGTTAACATGCTGGTGATAGTCTTCGTCTTGGTTGTTGGCCTGTTCCATGTAGACAGTTCCAATTGGGCTGGAGTCGATCAGTTCCTTCCTTATGGAGTTTCAGGAGTCTTGGCTGGAGCTGCGAGCTGTTTCTATTGCTTTGTCGGTTTCGATGTGATTGCCACAGCCAGTGAGGAGACCATTAACCCCAAGAGGGCCATTCCTCTCTCCATCATGTTGTGTCTTGTCATCAGTTTTCTTGCTTATTTCGGAGTTGCGTCTATATTGACTCTGATGGTGTCCTACGACAAGCTGGACAAGTTCGCCCCATTACCCGAGGCTTTTAAAGCGGCTGGTGTGCCCTCAGCAAAGTATGTCATTGCCATTGGAGGTCTCTGTGCCTTGGCCGGATCGCTCATGAGTGGTATCTTCGCCGTTCCTCGTATCATGTACTCCATGGCTTCTGACGGTCTCCTCTTTAAATTCTTCTCAAGAATCTACGCCCGTACAAACGTCCCAGTCATCTCAATCGCTTTTGCAGGGTTGCTGGCTGCCATACTAGCCCTTCTGCTGGACCTGAAGCAACTGGTTGAAATGCTGTCGATTGGCACCTTACTCGCTTATACCCTCGTCGCTCTCTCTGTCCTCGTTTTGCGGTTCCAGCCTGGGGTTCAAGACACCGATTACGACGAAGAGACTTCGAGTTCTGTAAGAAGCTACAAAATTATATGTTGCCAAAAGATGCTGCCTGAAGCAAAGGGTCCCGAATACAAGCCGCTTGGAAATGTCACAGCTGACAAGGATCAAGACAAGAAGAACATGGAAGGGCCCACTGAAACCACGAGTCACATCGCAAACGCCGCTGTCTCCTTGATAGTTGTGAGTCTCGCAGGATTCTGTGCTCTGTTAATCGCAGGATGGGGAGCTTTGGGAAACAAGGAAGCATGGGCCATATTCACGGCATGTTTACTTGGCATATTCATGACTTTTGGTGTGGTGGTCATGCAGTTACAGCCCACGAACAATGCAAGCTTTCCATTCAAAGTTCCGTGTGTTCCAGCGCTGCCTATTGCAAGTGTTGTCATCAATCTATTCCTCTTGCTCAAGTTGTCACCATGGACATGGGTGCGATTTGGGGTCTGGATGACGCTTGGTTTTGTCATCTACTTCGGTTATGGAATTAGAAACAGCGTAGAGGGCGCTCCAAAACAAGATGCCAATGAAAATGACTTTATTCTTCAAGGGACTCCAGATGTAGAACAAGATTTATATAAAGTTCAACCCACTCAGGCCTCTGAAGACAAGCAACCTTTGGCTTCGAGCTTCAATGAACAACAGTAATGTCAATAGGCGAAAGATATGTTTATTTTATTAGCTAATTCAGCGGGCTTTTATTCTTTAGTTTGCCTTGCTAAATTTCAAAGTTTCTTTCTTGTGCTTCATTTAAGGATCTTGAGATGTCATAAACTTCTTACTGATCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B5D5N9	Cationic amino acid transporter 2 OS=Rattus norvegicus OX=10116 GN=Slc7a2 PE=1 SV=1
B3TP03	Cationic amino acid transporter 2 OS=Gallus gallus OX=9031 GN=SLC7A2 PE=2 SV=1
P30825	High affinity cationic amino acid transporter 1 OS=Homo sapiens OX=9606 GN=SLC7A1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13906 all species →	AA_permease_C	C-terminus of AA_permease	Domain	Interproscan
PF13520 all species →	AA_permease_2	Amino acid permease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029485 all species →	Domain	Cationic amino acid transporter, C-terminal	Interproscan
IPR002293 all species →	Family	Amino acid/polyamine transporter I	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43243 all species →	INNER MEMBRANE TRANSPORTER YGJI-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006865 all species →	Biological Process	amino acid transport	Interproscan
GO:0015171 all species →	Molecular Function	amino acid transmembrane transporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g25816.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g25816.t2 across 39 RNA-seq samples of Acropora digitifera. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.