Gene detail

Detailed information of g2586.t1 in Montipora capitata

Genomic Location: Sc0000040:166794...175762
NR annotation: XP_029190548.2, INO80 complex subunit D-like isoform X2 [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g2586.t1

atgtctcggaagaacacttcaggaaggactttaaatgttgatgccaagaaggatccagcgaaatctacgaacgtcatgtttgaaggaaagaacattcattcttcgccgttggatggaaaattactgtgtagttacagtgaaaagctttgtaagcaacggaggctcaatggctacgctttctgtattcgtcatgtgttggaagacaaaaatgccccgtttaaacagtgtcagtttgtggcaaaatacaacggacatcagtgtacaaatcccataccattcgccgaggaaagaatatactgcaacagccatttacaagttctgggaattgttccgaagaagactcgacggaaaaaaccagaggaaactggtgaaagcgaattggattcatcgcccactactgctgaattgaaattgcggacagatgttttaacgactccttcttcgacaaacatgtcccttcttcctccccaaatctttccttttcgtttaaaaaagcctaaaatccaaccccagccgatgaactacacgaatattcctggtatagaagagttgagagaaagtcgaaagaaatggcataaagataaaggcgatttattcacaatttatgacatgtacagttcagacggagaaagttcaagtgagggtgatgaaatgccttggcaacagatgtggctttctacggacagtgatcttgattttgatgcttttaggggagagaacaactgcttggaatctgacataagaacagcaaagatttcaagactgagtacacagttacgtcggcaacttcatcagctcaggcgaactctacggatacgtggacgttatcataaggatgtggtggcatgtggtagtgttttggtgaaggctattcacagcaacagctctgcttgtgtggattccttgcttgaaaacagcaagagatccagaaaaactagagcaaagccttcaaagtgtctgaaaaaaatctgtgcattttcactagatgatgtccagtgttccagtaaggctttcccgtacactaagttctgcaaggatcacatcatgaatgacgccaaacaagttctgtatgctcagtgcactgcaaagtggcctggtggactccagtgttcggtgcctgtatttgatgtcatccatgaaagacctctttgtgatgagcatgccaggaaaaaggaaaagtaccaagaagcacaagctcaagcacaagccgctgctgcagctgcaaagtcatctcaaggaacactgaaaccgccagccaaaaaacagcggcgcaaaccacaggcaaaggccccattatttcaaaaggtggctaaacaagctcgaaggcctgtcaacaggaagccagtcgttccaaggtcaaacaagaataaagtaataaagaccacaaacaattctcaaagacatgttggtctggacaatacattgagttctgaaaactcctctggaatgttgtctccagatattagtttatcaatatcatcagattattctcatggaagtgcttcttcaccaatgtctccagcactcgatgactaccaagaatatggatcaccattatttggggcacagcaaagagatcagattcttcttggagatcttgaggaggaggaggtggaggaggaaagtcttggaagggatttcccaattgtatccaatactggtaacagctcttcgttaaagggcctgtattcaaccaaaagccaacattgtgtgccagcgtctgtgataactcacactccgggattgataaacagtggtgtaatacttgatgccattcaaggaaacataccaactgaatccccacttcatagcaaaagtaaaccaaatagttccaaagtgagggatggaaagaaactgcaagacacaagttgcccatctatgcactctgtcacaagtattctctcgtcacatgttaatcgtaacaacttgaaagatgagaacaagaaaattaatgaacttacattgaacaaagacccaatgttttcacctccacatggacttggaaatgaagtaaagtcacagagcaatggattgagctctgctcgccttcattctccaccaatgacaatggatgctatcttgtcacctacacaaaggtcttggtctgcagttgtcactaacacatcaccagcttcatcgtcatttacatcaccccttaattccactcaaactggattgtccagattggtttcaccacccttttccccaccgtcgatgtccccacacatctcaccccataccactcttggaagtgtatttacatttgacagaacttcacacctacagcagtcatctcacctaacttcaccaacgttaagtccttccagcccttcattccttcaaggtcaattaaagcatgccggtccaccttaccaacgccataatgatcttgacaactctgaggatccctttcttttcccagttgacagggaacaatctttatttggtgttccttttaatcagaatcatgattcatcattgggtgacttgcgtttaaggtaa

Transcript

g2586.t1

ATGTCTCGGAAGAACACTTCAGGAAGGACTTTAAATGTTGATGCCAAGAAGGATCCAGCGAAATCTACGAACGTCATGTTTGAAGGAAAGAACATTCATTCTTCGCCGTTGGATGGAAAATTACTGTGTAGTTACAGTGAAAAGCTTTGTAAGCAACGGAGGCTCAATGGCTACGCTTTCTGTATTCGTCATGTGTTGGAAGACAAAAATGCCCCGTTTAAACAGTGTCAGTTTGTGGCAAAATACAACGGACATCAGTGTACAAATCCCATACCATTCGCCGAGGAAAGAATATACTGCAACAGCCATTTACAAGTTCTGGGAATTGTTCCGAAGAAGACTCGACGGAAAAAACCAGAGGAAACTGGTGAAAGCGAATTGGATTCATCGCCCACTACTGCTGAATTGAAATTGCGGACAGATGTTTTAACGACTCCTTCTTCGACAAACATGTCCCTTCTTCCTCCCCAAATCTTTCCTTTTCGTTTAAAAAAGCCTAAAATCCAACCCCAGCCGATGAACTACACGAATATTCCTGGTATAGAAGAGTTGAGAGAAAGTCGAAAGAAATGGCATAAAGATAAAGGCGATTTATTCACAATTTATGacatgtacAGTTCAGACGGAGAAAGTTCAAGTGAGGGTGATGAAATGCCTTGGCAACAGATGTGGCTTTCTACGGACAGTGATcttgattttgatgcttttagggGAGAGAACAACTGcTTGGAATCTGACATAAGAACAGCAAAGATTTCAAGACTGAGTACACAGTTACGTCGGCAACTTCATCAGCTCAGGCGAACTCTACGGATACGTGGACGTTATCATAAGGATGTGGTGGCATGTGGTAGTGTTTTGGTGAAGGCTATTCACAGCAACAGCTCTGCTTGTGTGGATTCCTTGCTTGAAAACAGCAAGAGATCCAGAAAAACTAGAGCAAAGCCTTCAAAGTGTCTGAAAAAAATCTGTGCATTTTCACTAGATGATGTCCAGTGTTCCAGTAAGGCTTTCCCGTACACTAAGTTCTGCAAGGATCACATCATGAATGACGCCAAACAAGTTCTGTATGCTCAGTGCACTGCAAAGTGGCCTGGTGGACTCCAGTGTTCGGTGCCTGTATTTGATGTCATCCATGAAAGACCTCTTTGTGATGAGCATGCCAGGAAAAAGGAAAAGTACCAAGAAGCACAAGCTCAAGCACAAGCCGCTGCTGCAGCTGCAAAGTCATCTCAAGGAACACTGAAACCGCCAGCCAAAAAACAGCGGCGCAAACCACAGGCAAAGGCCCCATTATTTCAAAAGGTGGCTAAACAAGCTCGAAGGCCTGTCAACAGGAAGCCAGTCGTTCCAAGGTCAAACAAGAATAAAGTAATAAAGACCACAAACAATTCTCAAAGACATGTTGGTCTGGACAATACATTGAGTTCTGAAAACTCCTCTGGAATGTTGTCTCCAGATATTAGTTTATCAATATCATCAGATTATTCTCATGGAAGTGCTTCTTCACCAATGTCTCCAGCACTCGATGACTACCAAGAATATGGATCACCATTATTTGGGGCACAGCAAAGAGATCAGATTCTTCTTGGAGATCTTGAGGAGGAGGAGGTGGAGGAGGAAAGTCTTGGAAGGGATTTCCCAATTGTATCCAATACTGGTAACAGCTCTTCGTTAAAGGGCCTGTATTCAACCAAAAGCCAACATTGTGTGCCAGCGTCTGTGATAACTCACACTCCGGGATTGATAAACAGTGGTGTAATACTTGATGCCATTCAAGGAAACATACCAACTGAATCCCCACTTCATAGCAAAAGTAAACCAAATAGTTCCAAagtgagggatggaaagaaacTGCAAGACACAAGTTGCCCATCTATGCACTCTGTCACAAGTATTCTCTCGTCACATGTTAATCGTAACAACTTGAAAGATGagaacaagaaaattaatgaaCTTACATTGAACAAAGACCCAATGTTTTCACCTCCACATGGACTTGGAAATGAAGTAAAGTCACAGAGCAATGGATTGAGCTCTGCTCGCCTTCATTCTCCACCAATGACAATGGATGCTATCTTGTCACCTACACAAAGGTCTTGGTCTGCAGTTGTCACTAACACATCACCAGCTTCATCGTCATTTACATCACCCCTTAATTCCACTCAAACTGGATTGTCCAGATTGGTTTCACCACCCTTTTCCCCACCGTCGATGTCCCCACACATCTCACCCCATACCACTCTTGGAAGTGTATTTACATTTGACAGAACTTCACACCTACAGCAGTCATCTCACCTAACTTCACCAACGTTAAGTCCTTCCAGCCCTTCATTCCTTCAAGGTCAATTAAAGCATGCCGGTCCACCTTACCAACGCCATAATGATCTTGACAACTCTGAGGATCCCTTTCTTTTCCCAGTTGACAGGGAACAATCTTTATTTGGTGTTCCTTTTAATCAGAATCATGATTCATCATTGGGTGACTTGCGTTTAAGGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q566I1	INO80 complex subunit D OS=Xenopus laevis OX=8355 GN=ino80d PE=2 SV=1
A1L1F6	INO80 complex subunit D-B OS=Danio rerio OX=7955 GN=ino80db PE=2 SV=1
Q66JY2	INO80 complex subunit D OS=Mus musculus OX=10090 GN=Ino80d PE=2 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003964 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13891 all species →	zf-C3Hc3H	Potential DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025927 all species →	Domain	Potential DNA-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16198 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11668	INO80D; INO80 complex subunit D	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g2586.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

94.6Max TPM

49.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	48.02	94.57
whole organisms · low pH treatment	15	15	49.05	88.32
whole organisms · extra low pH treatment pH treatment	12	12	50.85	88.51

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	94.57
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	68.41
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	65.94
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	64.58
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	61.97
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	58.09
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	57.88
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	56.78
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	56.27
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	52.90
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	47.58
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	45.67
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	42.97
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	40.94
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	34.18
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	32.67
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	32.28
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	26.28
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	26.24
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	23.52
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	18.78
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	88.32
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	69.72
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	64.91
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	62.50
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	58.11
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	55.18
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	53.83
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	49.81
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	41.49
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	38.09
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	34.97
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	34.18
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	31.49
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	31.00
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	22.18
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	88.51
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	67.55
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	58.88
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	57.95
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	57.59
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	51.45
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	51.44
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	49.04
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	41.28
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	39.25
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	25.51
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	21.70

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.