Gene detail

Detailed information of g2587.t1 in Acropora digitifera

Genomic Location: chr2Alt:2142125...2157715
NR annotation: XP_029213274.2, ubiquitin carboxyl-terminal hydrolase 20-like isoform X2 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr2Alt.g2587.t1

AAAGAAATATAAGAGGCATAGAACATTGAGAAAAGGACAGACAAGACAAAGAAGAGACAATGATGTGGACATGTACTCAGACAGTGGTGACGATAGCGCAGATGGTAAACCACTTAATGTGGACACAAGGGAAGAACAAGTGGACAGAAAGTGGGACAAGAAGGCTAAACAAATGACAGCCAATGTTAATAGTATTGACGCCGAGGATGTGTCAGTATCAGTTGAAGACGAACCAATGAGTGATGCTCAAAGTGAGCATAATGATCAGTGTTATGAGGTGATGGATGCCGATGACAGGGCATTAATTAAGGAAGAGAAACCTGTTGGTCAAACTGCTAACGAAAAAGGAATTCACTCACTGCCTCTAGAACAACCTCCTAAATTGCCCAAAGTGACAGAATCAAGTAAAAAGAAAGAACCTGTCATCTACAGCAGTATAGTAACAGACTTGTTTGATGGAACAATACAGAGCTCTGTTCAATGCCTAACTTGCCACAGGGTTTCTTCAAGAGCAGAAACATTCCAAGATGTTTCTCTTCCAATTCCAGGAAAGGATGAATTGACAGTTCTTCATTCTTCTCAATGCTCTCCTCTGACGTCATGCTCCTCTTTGATGGACAGAAGTCAAGAAAAAAGCTGGTTGACAACTATAATTCAATGGCTTAAAAGCAACATGTACAGGTGGTTTGTAGGTCCTCAAGTTACACTTCATGACTGCCTTTCAGCATTTTTTTCAGCAGATGAACTCAAAGGGGATAACATGTACAGCTGTGAAAAATGTAAAAAGCTTAGAAATGGTGTCAAGCTTTGCAAAGTAATGCATCTTCCTGAGATCTTGTGTATTCATCTGAAGCGTTTTAAACATGAAATGTACTTTTCTTCCAAAATCAATCATTTTATTTCATTTCCACTCACTGGATTGGACATGAAGCCCTTTGTGGTAAAAGATTTTACCAAGTTGGATCCAAATTACAGTTGTACAACTTATGATCTTGTTGCTGTTGTAACACATCATGGAAGTGTTGGAGCTGGTCATTATGTTAGCTTTGCCAAGAACTACATTAATGGAAAGTGGTATGAGTTTAATGACTCATGGGTCAGTGAAGTGCCTGACTCCTATGTATTAAATGTGGAAGCCTATGTATTATTTTACAGGAAATCAAGTGAAGAGGCTACCAAAGAGCGTCAGATGGTTTATAATTTGTTTAAAGATTCACAGCCCAATGAGTCAAGGTATTTTGTCTCCAAGAAATGGCTCACAAAGTTCCAGTCTTGTATGGAGCCAGGTCCTATTACCAACTCAGACTTCCTTTGCCCTCATGGGGGTGTTAATCCATTGAATATTGAAAGAATTCAAGACATAACAACTGCTCTACCTGAATCCGTCTGGAATCATTTACTTGCCAGGTTTGGAGGTGGCCCCCAAGCAAAATCACTGAACGTGTGCAGACATTGTAAGCGAGCTCAAGATGAACTCGAAAGGAAGAGAGAAACAGAAATGGAAACATTTAAAAGGTTGAACCATGATTATCCAGCCAATGAGAATGTAGACACATATTGCATCAGTATGCGATGGTTTAGACAGTGGGAAATGTTTGTCAAGGGCCAAGAGCAAGACCCTCCTGGCCCTATTGATAACAGCAACATTTTATTTATGAAAGGGAACACTAGAGTATTGCGATCCAATTCTGAGCATGGACAGCTTTCACAGGAAACCTGGAGATTTCTGTATGATATTTATGGTGGAGGGCCTGTGTTTTACACGGAGGGAAAGAAAGAAGTTGAAGAAAAGCAAGATCAAAAGGAACAAGATGAACAGCTCCAGCAGGCAAAGAGCATGCCACATATGTGGCATGATTGTGGCATGATTATTTTTCGTCTTCCAAACAATCACATTATTTGTGACATTGTTGTTGCCATAGCTGTCATTGCTTCTTAAACACTCTAATGTACCACCAAAGAACCTGAGGCCAGGTCGCTATACCATCTTCTCCTATTATATTCTCTATAATTTATAAGTAACCTCTTTTTGACAACCACAAATTTGCAAAGAACATGCTTTGAAACCTACCTAAGGTAATTTAGTTTCATGTTCTCTTCTTGTTCTCATGTTATCTCGATAGCCTCCTTTATTTTGCAAAACAACCCTTCAGTTTTCAAAATAAATACATGCAGTCAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8R5K2	Ubiquitin carboxyl-terminal hydrolase 33 OS=Mus musculus OX=10090 GN=Usp33 PE=1 SV=2
A5PMR2	Ubiquitin carboxyl-terminal hydrolase 33 OS=Danio rerio OX=7955 GN=usp33 PE=2 SV=1
A5PN09	Ubiquitin carboxyl-terminal hydrolase 20 OS=Danio rerio OX=7955 GN=usp20 PE=3 SV=1

Gene family

Family type	Membership / link
Ubiquitin family	DUB\|USP\|USP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06337 all species →	DUSP	DUSP domain	Domain	Interproscan
PF00443 all species →	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006615 all species →	Domain	Peptidase C19, ubiquitin-specific peptidase, DUSP domain	Interproscan
IPR028889 all species →	Domain	Ubiquitin specific protease domain	Interproscan
IPR035927 all species →	Homologous_superfamily	DUSP-like superfamily	Interproscan
IPR018200 all species →	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR001394 all species →	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR050185 all species →	Family	Ubiquitin carboxyl-terminal hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21646 all species →	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11848	USP20_33; ubiquitin carboxyl-terminal hydrolase 20/33	EC:3.4.19.12	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.