Gene detail

Detailed information of g25932.t1 in Acropora digitifera

Genomic Location: chr12Alt:11642809...11651187
NR annotation: XP_015765356.1, PREDICTED: tumor necrosis factor alpha-induced protein 3-like isoform X1 [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g25932.t1

ATGGCCGCCCACGGCTTTCATGTTCAACCGTCCAGCCATCTGTTTGAACGTAACATTTCCCTCAACGACTTGGATTTGGCCCTGAACGTGCGAGAAATTGTCCGCAAAGATGTTGTGGTGCCAACAGAAGCCACGAAGCACCGCCACCTTGGCATTTCAACGAGTTATTCCTTCGTTTTGCCGTCATTTGAGAATTTTGAAGATGAATTCCGCAAATTTGTGTTTAGCTTTCTTGTGGATGGTCACATCTTGAGGGAATTGGAGACAGCTAAACGGCTTAATTGGTGTAGGGGGTTATGTCGCTTGGTTACAGTTAACACGTTGGGTGATGGTAATTGCTTAATGCATGCAGTTTCCATCGGAATGTGGGCTGTAAATGATCGCTATCAAACGCTGAGGAAAACTGTTTATGAAGCACTGGTCGAGGACGTGGAAGGTACAAGGTTCTACTACAGCCGGTGGAGAGCAGAAGAAAACCGTCAAGTGTTGACTCAAAATGGTGGATATGAGAGAACAGAAGAACAGTGGGCAAATGAGTGGGAAGAAGTGATAAGGCTAGCATCACAGACTCAATTTCCCTTTGGTGCCTGTGGTCCACAATATGGAAGCCTTGAGGAAATCCACATATTTGTCCTAGCAAACATCTTGCGGCGAACTATTATTGTGGCCTCTGATGAAACTCTGAGAGGACAATACGATGAGTCATATGCACCAATAAACTTTGGAGGTATTTATTTGCCTCTGTGGTGGGACTCTATTGACTGTGAAAAAAGCCCATTGGTTATTGGTTACGCTGATGGCCATTTTACAGCAGTTGTCAGTATCGATGATGGTAAGTTAGACCTTGGTATTGAGACCCACATCGCTCCAACCTCATCTAACTGCATTCATGCTGTACCATTGGTCAAGTTTGATGGAACTCCTTTACCTGTGCATTTTCTTTATGATCATGAAGAGCCCATGGCAAGTGATCGCGTCAGACAGTACTTGGACTGTTCCAAAGTTTCCTTGCCAAGCAACTCAGGGGAATCAAGATCAACTGTTGTTGTTGCAAAGGTGCATTTTGTAGAGCCACCTCAATGCATGAAAGATCTTGTCCAAGGTTACTTTGCAAAAGCCAGAAAAGAATTCCAGCGTGTGTCAAAAAGCAAGCAGTTGCATAATAGGACAAAATTTCAGCCAGGTATCCAACAGTCAACTGTTCCATTTGTGCGGTGTCAAACTCAGGGCTGTGAATTTTATGGGTCAACAGAGACTGGGAACCGTTGTTCGCATTGCCTCAATGAGTATATCAGGACATTGGGACCTTCTAGGGAACCAAGCCCCTGTGCACCTGCAAGGCAGCCTTCAACTAGGGAACAACAAGAAAGTGTAAATATCCGTGCAACAGCAGCCAGCATTGATCGCTCAAAAGCAGTCCCTAACAAGTGCCACACCATTGGTTGCAAGTATGTGGCTGTTCCAGAGCAAGGTGGACTTTGTGAAAGGTGCTTTGATGCTGAACAAAGTGCTGCAGAGTTAACTGCAAGCATGGGTGCTGTTCAGTTGGTAACTGCAATTCCTTGTGCCAATCATGGTAATGGTTGTCAGTTTTTTGGCCTCCCACACCAGGATAATTTGTGCTCCAGATGCTACAGAGCCTTCTGCCTGCAAATGGAAAGCAGTTTGGGTGTGGCTTCACCCACTGGATTGCCTCCCACAAGTCCAACAGGAACTTCAGCTGTGGGTGTTTATTGCCAGAGTCCAGGCTGTGGTTTCCCTGGCATTCCAGCCTTGTATGGTATGTGTGTTCGCTGTTACACAGGCTGCATCAGTTCTTTTGTAACTAAAAGAGGAAGTTCAGTGGAAAATGTGTCTTCATCCAGGTATGATCCTGCACCCAGACCTGCACATCCACCAGATATCAAAAGTAGGAACCAGCCACCATCAGATGTCACTAACAGGAACCAGTTGCCATCTGGAGTAGAAAGAAAAGGAGTCATACCAACAGGTGCTGGGATGAAAGGGGTTTTGTGTGCCACTCCAGGGTGCATAAATGAAGGAGTGTTTCAGTACAAAGATCTGTGTGTGGAATGTTATGAAGGAAGACCAAGTAGCGGTAACCCAGGGTCAGTTTTATCAATAGCTGCATCAGGTCATTTCCCAGTGACTCAAGCTCCTCTAAACACAGTAACTACAACAACAGCTGCAGTGCCAGTGAATCAAATGGCATCAGGTTTCCCAAACCATCCAATGGCATCAGCAATGTCAAATCCTTCTAACCAAGGTTGTGATGATCGGATTCCAGTCCGATCTAGGAGTGGTTCAGGGGTGACATCCCAGCATTCAGGATTGCCAGTGACTACTGTGGCAGGTTCAGCTTTACTATGGACATCCACAACGCCCAGAGCCCAAAGAGCCCCAATTGTGACAAGTGCAAGGTTAGTGCAGCAATCTGATCAGAGAAGTGCTGCTTTGCTTCCAGCAGTCTCCACTTCAGAATCTGCCCAAGATGAGCCAGATCTTTGTATATTGGGATGTGGGAAGCCAGCCGTTGACGAGAATGGCCTTTGTCAAGAGTGCTATGCAAAAGCCTTTGAGTTTGAACTAAGTAGGGAATCTGTGCAACAGTCATCTAGACAGCAAGGAGCCACAGCATCTGAACCTTTTGGTCACCAGATGAGCACAAATGGCAGAAGTAGAAGTGCTCCTACTAGCCCCACCAGAAAGCCCCAACCCACAGAACCTGAAGCAACTGGGATGAAGTTTTGTGGAATAAAGCCATTGCCCTGCCAATCTAAAGGCTGTATGAGTTTTGGTACTCGAAACACGAATTATTTGTGCGAGAAGTGCTTTGGCGAGAAGGGAAATCCTCCCTCGACTGACCCTTTTTCTCTGCAAACTACTCGTTCCCAGGGTGGCCTTAGAGCTCGTCCTGTGCAACGAAATCGACTTGTGGACGACAGCAATGAAGCCGATGCACTCAACTTTCCCGTTCAAGTCTGCCAGAGTCAAAGTCCTGCGTATCGATCTACAGAACTTGAGCGTTTTCTAAGTAGTGGGAGAAATAATGTCCAGGGTCGGGAATGCCGTCAAGACAACTGCCCATTGTTCGGTACACCAGAGATGAATGGTTATTGCTCACGTTGTTTCTTAGACATCACAATTTCACAATCAGGGCCTTGTTCAGTCCCAGATTTTCCATCTGAAGCTTTTTCTGGGACTGAGTTATCATCTTCCTCGCTACCCGTTACCTGA

Transcript

chr12Alt.g25932.t1

ACGGTACACGGCCACGATTAATTGCCGCCTGTTTACTGGCTGTTATAAGCATCGTCATTGTTAGGTTTTGAAGAACGGTTATTTTTCTCATCCTGTACCCTTTTATCCTTGGTGAAGCTGATATTACAAAATTCGATCACTTGTCGATTACAGGATTGTTTCGAGTTCGATAGACCTTTTTTCGCAGTGCTCAAAATATGGCCGCCCACGGCTTTCATGTTCAACCGTCCAGCCATCTGTTTGAACGTAACATTTCCCTCAACGACTTGGATTTGGCCCTGAACGTGCGAGAAATTGTCCGCAAAGATGTTGTGGTGCCAACAGAAGCCACGAAGCACCGCCACCTTGGCATTTCAACGAGTTATTCCTTCGTTTTGCCGTCATTTGAGAATTTTGAAGATGAATTCCGCAAATTTGTGTTTAGCTTTCTTGTGGATGGTCACATCTTGAGGGAATTGGAGACAGCTAAACGGCTTAATTGGTGTAGGGGGTTATGTCGCTTGGTTACAGTTAACACGTTGGGTGATGGTAATTGCTTAATGCATGCAGTTTCCATCGGAATGTGGGCTGTAAATGATCGCTATCAAACGCTGAGGAAAACTGTTTATGAAGCACTGGTCGAGGACGTGGAAGGTACAAGGTTCTACTACAGCCGGTGGAGAGCAGAAGAAAACCGTCAAGTGTTGACTCAAAATGGTGGATATGAGAGAACAGAAGAACAGTGGGCAAATGAGTGGGAAGAAGTGATAAGGCTAGCATCACAGACTCAATTTCCCTTTGGTGCCTGTGGTCCACAATATGGAAGCCTTGAGGAAATCCACATATTTGTCCTAGCAAACATCTTGCGGCGAACTATTATTGTGGCCTCTGATGAAACTCTGAGAGGACAATACGATGAGTCATATGCACCAATAAACTTTGGAGGTATTTATTTGCCTCTGTGGTGGGACTCTATTGACTGTGAAAAAAGCCCATTGGTTATTGGTTACGCTGATGGCCATTTTACAGCAGTTGTCAGTATCGATGATGGTAAGTTAGACCTTGGTATTGAGACCCACATCGCTCCAACCTCATCTAACTGCATTCATGCTGTACCATTGGTCAAGTTTGATGGAACTCCTTTACCTGTGCATTTTCTTTATGATCATGAAGAGCCCATGGCAAGTGATCGCGTCAGACAGTACTTGGACTGTTCCAAAGTTTCCTTGCCAAGCAACTCAGGGGAATCAAGATCAACTGTTGTTGTTGCAAAGGTGCATTTTGTAGAGCCACCTCAATGCATGAAAGATCTTGTCCAAGGTTACTTTGCAAAAGCCAGAAAAGAATTCCAGCGTGTGTCAAAAAGCAAGCAGTTGCATAATAGGACAAAATTTCAGCCAGGTATCCAACAGTCAACTGTTCCATTTGTGCGGTGTCAAACTCAGGGCTGTGAATTTTATGGGTCAACAGAGACTGGGAACCGTTGTTCGCATTGCCTCAATGAGTATATCAGGACATTGGGACCTTCTAGGGAACCAAGCCCCTGTGCACCTGCAAGGCAGCCTTCAACTAGGGAACAACAAGAAAGTGTAAATATCCGTGCAACAGCAGCCAGCATTGATCGCTCAAAAGCAGTCCCTAACAAGTGCCACACCATTGGTTGCAAGTATGTGGCTGTTCCAGAGCAAGGTGGACTTTGTGAAAGGTGCTTTGATGCTGAACAAAGTGCTGCAGAGTTAACTGCAAGCATGGGTGCTGTTCAGTTGGTAACTGCAATTCCTTGTGCCAATCATGGTAATGGTTGTCAGTTTTTTGGCCTCCCACACCAGGATAATTTGTGCTCCAGATGCTACAGAGCCTTCTGCCTGCAAATGGAAAGCAGTTTGGGTGTGGCTTCACCCACTGGATTGCCTCCCACAAGTCCAACAGGAACTTCAGCTGTGGGTGTTTATTGCCAGAGTCCAGGCTGTGGTTTCCCTGGCATTCCAGCCTTGTATGGTATGTGTGTTCGCTGTTACACAGGCTGCATCAGTTCTTTTGTAACTAAAAGAGGAAGTTCAGTGGAAAATGTGTCTTCATCCAGGTATGATCCTGCACCCAGACCTGCACATCCACCAGATATCAAAAGTAGGAACCAGCCACCATCAGATGTCACTAACAGGAACCAGTTGCCATCTGGAGTAGAAAGAAAAGGAGTCATACCAACAGGTGCTGGGATGAAAGGGGTTTTGTGTGCCACTCCAGGGTGCATAAATGAAGGAGTGTTTCAGTACAAAGATCTGTGTGTGGAATGTTATGAAGGAAGACCAAGTAGCGGTAACCCAGGGTCAGTTTTATCAATAGCTGCATCAGGTCATTTCCCAGTGACTCAAGCTCCTCTAAACACAGTAACTACAACAACAGCTGCAGTGCCAGTGAATCAAATGGCATCAGGTTTCCCAAACCATCCAATGGCATCAGCAATGTCAAATCCTTCTAACCAAGGTTGTGATGATCGGATTCCAGTCCGATCTAGGAGTGGTTCAGGGGTGACATCCCAGCATTCAGGATTGCCAGTGACTACTGTGGCAGGTTCAGCTTTACTATGGACATCCACAACGCCCAGAGCCCAAAGAGCCCCAATTGTGACAAGTGCAAGGTTAGTGCAGCAATCTGATCAGAGAAGTGCTGCTTTGCTTCCAGCAGTCTCCACTTCAGAATCTGCCCAAGATGAGCCAGATCTTTGTATATTGGGATGTGGGAAGCCAGCCGTTGACGAGAATGGCCTTTGTCAAGAGTGCTATGCAAAAGCCTTTGAGTTTGAACTAAGTAGGGAATCTGTGCAACAGTCATCTAGACAGCAAGGAGCCACAGCATCTGAACCTTTTGGTCACCAGATGAGCACAAATGGCAGAAGTAGAAGTGCTCCTACTAGCCCCACCAGAAAGCCCCAACCCACAGAACCTGAAGCAACTGGGATGAAGTTTTGTGGAATAAAGCCATTGCCCTGCCAATCTAAAGGCTGTATGAGTTTTGGTACTCGAAACACGAATTATTTGTGCGAGAAGTGCTTTGGCGAGAAGGGAAATCCTCCCTCGACTGACCCTTTTTCTCTGCAAACTACTCGTTCCCAGGGTGGCCTTAGAGCTCGTCCTGTGCAACGAAATCGACTTGTGGACGACAGCAATGAAGCCGATGCACTCAACTTTCCCGTTCAAGTCTGCCAGAGTCAAAGTCCTGCGTATCGATCTACAGAACTTGAGCGTTTTCTAAGTAGTGGGAGAAATAATGTCCAGGGTCGGGAATGCCGTCAAGACAACTGCCCATTGTTCGGTACACCAGAGATGAATGGTTATTGCTCACGTTGTTTCTTAGACATCACAATTTCACAATCAGGGCCTTGTTCAGTCCCAGATTTTCCATCTGAAGCTTTTTCTGGGACTGAGTTATCATCTTCCTCGCTACCCGTTACCTGATGCTCCAAAATAGCCCCTTCGGGCAAAGAAGGTCACTGTGAGGATGGATAGGGTTTACATGCTGTAAATGCACCCAAGAAATACTTTACTACGTACAAGAGATTATAAAGATGCTCTCTCCCTAGCCTCATTTAAATGAGACTGAAAATAAGTGTCAAGTTTGTGACTAAGATTTTGTTCTTATTAAAGAAACTAACATTATCGGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P21580	Tumor necrosis factor alpha-induced protein 3 OS=Homo sapiens OX=9606 GN=TNFAIP3 PE=1 SV=1
Q4R8W3	Tumor necrosis factor alpha-induced protein 3 OS=Macaca fascicularis OX=9541 GN=TNFAIP3 PE=2 SV=1
Q60769	Tumor necrosis factor alpha-induced protein 3 OS=Mus musculus OX=10090 GN=Tnfaip3 PE=1 SV=2

Gene family

Family type	Membership / link
Ubiquitin family	DUB\|OTU\|OTU · all ubiquitin genes in this species
Ubiquitin family	UBD\|ZnF\|ZnF_A20 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01754 all species →	zf-A20	A20-like zinc finger	Family	Interproscan
PF02338 all species →	OTU	OTU-like cysteine protease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002653 all species →	Domain	Zinc finger, A20-type	Interproscan
IPR051346 all species →	Family	OTU Domain-Containing Deubiquitinase	Interproscan
IPR003323 all species →	Domain	OTU domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13367 all species →	UBIQUITIN THIOESTERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007010 all species →	Biological Process	cytoskeleton organization	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0030177 all species →	Biological Process	positive regulation of Wnt signaling pathway	Interproscan
GO:0035523 all species →	Biological Process	protein K29-linked deubiquitination	Interproscan
GO:0070530 all species →	Molecular Function	K63-linked polyubiquitin modification-dependent protein binding	Interproscan
GO:0071947 all species →	Biological Process	protein deubiquitination involved in ubiquitin-dependent protein catabolic process	Interproscan
GO:1990168 all species →	Biological Process	protein K33-linked deubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11859	TNFAIP3, A20, OTUD7C; tumor necrosis factor, alpha-induced protein 3	EC:3.4.19.12	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.