Detailed information of g261.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: PCI30291.1, DNA topoisomerase (ATP-hydrolyzing) subunit B [SAR324 cluster bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9I7C2DNA gyrase subunit B OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=gyrB PE=1 SV=1
P13364DNA gyrase subunit B OS=Pseudomonas putida OX=303 GN=gyrB PE=3 SV=2
P05652DNA gyrase subunit B OS=Bacillus subtilis (strain 168) OX=224308 GN=gyrB PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16741mRNA_decap_CmRNA-decapping enzyme C-terminusDomainInterproscan
PF06058DCP1Dcp1-like decapping familyDomainInterproscan
PF01593Amino_oxidaseFlavin containing amine oxidoreductaseDomainInterproscan
PF13450NAD_binding_8NAD(P)-binding Rossmann-like domainDomainInterproscan
PF01532Glyco_hydro_47Glycosyl hydrolase family 47RepeatInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF01751ToprimToprim domainFamilyInterproscan
PF00204DNA_gyraseBDNA gyrase BDomainInterproscan
PF02518HATPase_cHistidine kinase-, DNA gyrase B-, and HSP90-like ATPaseDomainInterproscan
PF00986DNA_gyraseB_CDNA gyrase B subunit, carboxyl terminusFamilyInterproscan
PF02196RBDRaf-like Ras-binding domainDomainInterproscan
PF00069PkinaseProtein kinase domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR031953DomainmRNA-decapping enzyme, C-terminalInterproscan
IPR010334FamilymRNA-decapping enzyme subunit 1Interproscan
IPR011993Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR036188Homologous_superfamilyFAD/NAD(P)-binding domain superfamilyInterproscan
IPR002937DomainAmine oxidaseInterproscan
IPR052206FamilyAll-trans-retinol saturaseInterproscan
IPR012341Homologous_superfamilySix-hairpin glycosidase-like superfamilyInterproscan
IPR050749FamilyGlycosyl Hydrolase Family 47Interproscan
IPR001382FamilyGlycoside hydrolase family 47Interproscan
IPR036026Homologous_superfamilySeven-hairpin glycosidasesInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR018522Conserved_siteDNA topoisomerase, type IIA, conserved siteInterproscan
IPR020568Homologous_superfamilyRibosomal protein uS5 domain 2-type superfamilyInterproscan
IPR013759Homologous_superfamilyDNA topoisomerase, type IIA, subunit B, C-terminalInterproscan
IPR006171DomainTOPRIM domainInterproscan
IPR011557FamilyDNA gyrase, subunit BInterproscan
IPR014721Homologous_superfamilySmall ribosomal subunit protein uS5 domain 2-type fold, subgroupInterproscan
IPR013506DomainDNA topoisomerase, type IIA, subunit B, domain 2Interproscan
IPR000565FamilyDNA topoisomerase, type IIA, subunit BInterproscan
IPR036890Homologous_superfamilyHistidine kinase/HSP90-like ATPase superfamilyInterproscan
IPR003594DomainHistidine kinase/HSP90-like ATPaseInterproscan
IPR013760Homologous_superfamilyDNA topoisomerase, type IIA-like domain superfamilyInterproscan
IPR034160DomainDNA gyrase subunit B, TOPRIM domainInterproscan
IPR002288DomainDNA gyrase B subunit, C-terminalInterproscan
IPR001241FamilyDNA topoisomerase, type IIAInterproscan
IPR003109Conserved_siteGoLoco motifInterproscan
IPR029071Homologous_superfamilyUbiquitin-like domain superfamilyInterproscan
IPR046995FamilyRegulator of G-protein signaling 10/12/14-likeInterproscan
IPR003116DomainRaf-like Ras-bindingInterproscan
IPR000719DomainProtein kinase domainInterproscan
IPR017441Binding_siteProtein kinase, ATP binding siteInterproscan
IPR011009Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16290TRANSCRIPTION FACTOR SMIF DECAPPING ENZYME DCP1Interproscan
PTHR46091BLR7054 PROTEINInterproscan
PTHR11742MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE-RELATEDInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR45866DNA GYRASE/TOPOISOMERASE SUBUNIT BInterproscan
PTHR45945REGULATOR OF G-PROTEIN SIGNALING LOCOInterproscan
PTHR24351RIBOSOMAL PROTEIN S6 KINASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000290Biological Processdeadenylation-dependent decapping of nuclear-transcribed mRNAInterproscan
GO:0000932Cellular ComponentP-bodyInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0008047Molecular Functionenzyme activator activityInterproscan
GO:0031087Biological Processdeadenylation-independent decapping of nuclear-transcribed mRNAInterproscan
GO:0043085Biological Processpositive regulation of catalytic activityInterproscan
GO:0016491Molecular Functionoxidoreductase activityInterproscan
GO:0005975Biological Processcarbohydrate metabolic processInterproscan
GO:0004571Molecular Functionmannosyl-oligosaccharide 1,2-alpha-mannosidase activityInterproscan
GO:0005783Cellular Componentendoplasmic reticulumInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:1904382Biological Processmannose trimming involved in glycoprotein ERAD pathwayInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003918Molecular FunctionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006265Biological ProcessDNA topological changeInterproscan
GO:0005694Cellular ComponentchromosomeInterproscan
GO:0030695Molecular FunctionGTPase regulator activityInterproscan
GO:0005096Molecular FunctionGTPase activator activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0008277Biological Processregulation of G protein-coupled receptor signaling pathwayInterproscan
GO:0007165Biological Processsignal transductionInterproscan
GO:0004672Molecular Functionprotein kinase activityInterproscan
GO:0006468Biological Processprotein phosphorylationInterproscan
GO:0004674Molecular Functionprotein serine/threonine kinase activityInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0018105Biological Processpeptidyl-serine phosphorylationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K23741MAN1B, MNS3; endoplasmic reticulum Man9GlcNAc2 1,2-alpha-mannosidaseEC:3.2.1.209
DNA repair and recombination proteinsko03400deepkoala
Retinol metabolismko00830deepkoala
Messenger RNA biogenesisko03019deepkoala
Membrane traffickingko04131deepkoala

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