Gene detail

Detailed information of g2611.t1 in Montipora capitata

Genomic Location: Sc0000040:580864...603643
NR annotation: XP_029179463.2, cilia- and flagella-associated protein 69-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g2611.t1

atggcgacggccacagccgggcctatccctgtggttaataacgttattactgacgaagattttgataatttacggaatgatggaaagcattctgctaagcttgttcctgtcagtgttgtcaaaacgcataaacttctcacagacaaacactcgaaagaaatgctggatcgccatgtacgagcgattcaccgacttgcgaagtacttcagtcatggatttctaatgaaggatgctgacctggtgtgtgacatgataaaagtttgtagagaaaggcttgagaggagtcctcaatatgagaaaccattgtgtgatctgataaaagtttgtgtgcatccatttttgaaagaaagaacatcagatgaatccacttacgcttcttcaatcataaatcttctgactgaatttggtctcaccatgaaggtacagaatgttgctgttcagctgcagttaggagagtcacttataaaattctacactgaacaaccaatcgaaaggcaactgtttgaaggttttcaagcctctatgactgcttacaacagaagtttggttgaaaaaagtggtgttgctcgtgcacttgtcgagagtttagaattcatggaagatctgagcgtgagattggaaattatgaaagttcttcaatgttattcattctcagcaataaactgtgatgatatgttgtcagttagtggagcctcattgttatgtagtgggatcaatatcccagacccatctgacagacttgtttttagaacagtggaaattctctggaatttactggaatttggctccaaacaagaggttgctagtcaactgaactgcaaagaatgcataagtgccttgagggatgcttttgtcaagaaggtcaaagagggctacagtcatgctgataggcagttacgaaatgatctactggtaattgcatccttagtgctttcactttgtccaacttctccttttatggaaactggtttgaccaagctgattacagtactggcaacatttactgaagttaaaagccatcacgagttggtccgaaatctcaaactgtaccagaaccatgaagactttgaattcaagaaattgctgatgaatatccttgtgttaataagtgccgattctgccagctgtcggatattatctgaaggacgggtcattttatctctattttcatttgtgcgagcaaatgataatatgtctgctattgagtggtctcctgcacagtttgaagagctgcagttacaggccttggacacactaagcactgttgcacctctttgcttggatgactacatgacctgtcagagtaacacaagattactgatgctacttgagtggtgtgttggacaagctgactatggtggtcatggtaacagtttccatggtagtggtggccgtggtaacaagcgctcccagatgcggtattgtctacgacttctacgaagtatggtgtctgtgggtgatgatgcattgaatcaggatctggttgaccaaggagcaatcaatcagattgttggaatacttctcaacgccagcacaagtcctgatgaaaatgacagcattgacattgagatgcagtgtgacatgctctttatagtatcgtccctctgtgacggagatacgcatagaaaggaactgtttggtgctcaaggtgttcaagtgttaacagagtacctaaaaagagatccggataaaatatgcagtccccttggtcatcatcagttgcttctctccgcggtggactgtgtttggtccgcagtactgggatgttatttaactgaacagctcttccttgaaaacgatggtgtgtttcatcttatggatttattggagatttgtccgcttacgatgcaaaatctgttgttaggttgcttaatggatctctgtgaaaacaccaaggctttggcacatgtgcagtcgtggcgtggtaaaaatcagatttcagccggcaagcttttggttgaactatggaaaaaggaagaattaaacatgggtgtaataagagatgaaaccggtaaaatttgtgacctacatcggcctcttatggggaaaatacaggagcggcaaggtgtcatcccacttcccgctgatcggccgagccaggcaatcgtggacgtgtctgaaaatatgagagccaaaatctactccatgttttgcaaactcggttttaatgcagttcccggtttatcaacgttggattatattaccgtcgctatcattgagaaatatctcgattttaagatgctggaagtatggaatgagattaaggtggagcttgaacaagaaaacatcagacctgtatctccagacgccgactccatgagtgaaattacgaaaatacttaatgacaaagccacagctgtctcagaaactcagaatcaacttctacaggctcaatgtaatcaagaccttattgaagaagaagagtattatgagtccataaaagaaaatcacagacaagaggagaaagcaataaaagactttgatgattacgtcaacagaacttctgattacacagtgctcacggctgcaaagagaacgcagttaagcgcaatacaagcatccagactgcacgacacaactcgcactggatggcttgcccacgaaactttacaggatgacctcaacacaacaactttttgtggcaggcaggtggaaatagaaagcacaccgctcgaattaacacgagcgttggtggatcctacattaagtgaggaagataaaaagaccctcgtagtaacgtga

Transcript

g2611.t1

ATGGCGACGGCCACAGCCGGGCCTATCCCTGTGGTTAATAACGTTATTACTGACGAAGATTTTGATAATTTACGGAATGATGGAAAGCATTCTGCTAAGCTTGTTCCTGTCAGTGTTGTCAAAACGCATAAACTTCTCACAGACAAACACTCGAAAGAAATGCTGGATCGCCATGTACGAGCGATTCACCGACTTGCGAAGTACTTCAGTCATGGATTTCTAATGAAGGATGCTGACCTGGTGTGTGACATGATAAAAGTTTGTAGAGAAAGGCTTGAGAGGAGTCCTCAATATGAGAAACCATTGTGTGATCTGATAAAAGTTTGTGTGCATccatttttgaaagaaagaacaTCAGATGAATCCACTTACGCTTCTTCAATCATAAATCTTCTGACTGAATTTGGTCTCACCATGAAGGTACAGAATGTTGCTGTTCAGCTGCAGTTAGGAGAGTCACTTATAAAATTCTACACTGAACAACCAATCGAAAGGCAACTGTTTGAAGGTTTTCAAGCCTCTATGACTGCTTACAACAGAAGTTTGGTTGAAAAAAGTGGTGTTGCTCGTGCACTTGTCGAGAGTTTAGAATTCATGGAAGATCTGAGCGTGAGATTGGAAATTATGAAAGTTCTTCAATGTTATTCATTCTCAGCAATAAACTGTGATGATATGTTGTCAGTTAGTGGAGCCTCATTGTTATGTAGTGGGATCAATATCCCAGACCCATCTGACAGACTTGTTTTTAGAACAGTGGAAATTCTCTGGAATTTACTGGAATTTGGCTCCAAACAAGAGGTTGCTAGTCAACTGAACTGCAAAGAATGCATAAGTGCCTTGAGGGATGCTTTTGTCAAGAAGGTCAAAGAGGGCTACAGTCATGCTGATAGGCAGTTACGAAATGATCTACTGGTAATTGCATCCTTAGTGCTTTCACTTTGTCCAACTTCTCCTTTTATGGAAACTGGTTTGACCAAGCTGATTACAGTACTGGCAACATTTACTGAAGttAAAAGCCATCACGAGTTGGTCCGAAATCTCAAACTGTACCAGAACCATGAAGACTTTGAATTCAAGAAATTGCTGATGAATATCCTTGTGTTAATAAGTGCCGATTCTGCCAGCTGTCGGATATTATCTGAAGGACGGGTCATTTTATCTCTATTTTCATTTGTGCGAGCAAATGATAATATGTCTGCTATTGAGTGGTCTCCTGCACAGTTTGAAGAGCTGCAGTTACAGGCCTTGGACACACTAAGCACTGTTGCACCTCTTTGCTTGGATGACTACATGACCTGTCAGAGTAACACAAGATTACTGATGCTACTTGAGTGGTGTGTTGGACAAGCTGACTATGGTGGTCATGGTAACAGTTTCCATGGTAGTGGTGGCCGTGGTAACAAGCGCTCCCAGATGCGGTATTGTCTACGACTTCTACGAAGTATGGTGTCTGTGGGTGATGATGCATTGAATCAGGATCTGGTTGACCAAGGAGCAATCAATCAGATTGTTGGAATACTTCTCAACGCCAGCACAAGTCCTGATGAAAATGACAGCATTGACATTGAGATGCAGTGTGACATGCTCTTTATAGTATCGTCCCTCTGTGACGGAGATACGCATAGAAAGGAACTGTTTGGTGCTCAAGGTGTTCAAGTGTTAACAGAGTACCTAAAAAGAGATCCGGATAAAATATGCAGTCCCCTTGGTCATCATCAGTTGCTTCTCTCCGCGGTGGACTGTGTTTGGTCCGCAGTACTGGGATGTTATTTAACTGAACAGCTCTTCCTTGAAAACGATGGTGTGTTTCATCTTATGGATTTATTGGAGATTTGTCCGCTTACGATGCAAAATCTGTTGTTAGGTTGCTTAATGGATCTCTGTGAAAACACCAAGGCTTTGGCACATGTGCAGTCGTGGCGTGGTAAAAATCAGATTTCAGCCGGCAAGCTTTTGGTTGAACTATGGAAAAAGGAAGAATTAAACATGGGTGTAATAAGAGATGAAACCGGTAAAATTTGTGACCTACATCGGCCTCTTATGGGGAAAATACAGGAGCGGCAAGGTGTCATCCCACTTCCCGCTGATCGGCCGAGCCAGGCAATCGTGGACGTGTCTGAAAATATGAGAGCCAAAATCTACTCCATGTTTTGCAAACTCGGTTTTAATGCAGTTCCCGGTTTATCAACGTTGGATTATATTACCGTCGCTATCATTGAGAAATATCTCGATTTTAAGATGCTGGAAGTATGGAATGAGATTAAGGTGGAGCTTGAACAAGAAAACATCAGACCTGTATCTCCAGACGCCGACTCCATGAGTGAAATTACGAAAATACTTAATGACAAAGCCACAGCTGTCTCAGAAACTCAGAATCAACTTCTACAGGCTCAATGTAATCAAGACCTTATTGAAGAAGAAGAGTATTATGAGTCCATAAAAGAAAATCACAGACAAGAGGAGAAAGCAATAAAAGACTTTGATGATTACGTCAACAGAACTTCTGATTACACAGTGCTCACGGCTGCAAAGAGAACGCAGTTAAGCGCAATACAAGCATCCAGACTGCACGACACAACTCGCACTGGATGGCTTGCCCACGAAACTTTACAGGATGACCTCAACACAACAACTTTTTGTGGCAGGCAGGTGGAAATAGAAAGCACACCGCTCGAATTAACACGAGCGTTGGTGGATCCTACATTAAGTGAGGAAGATAAAAAGACCCTCGTAGTAACGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A5D8W1	Cilia- and flagella-associated protein 69 OS=Homo sapiens OX=9606 GN=CFAP69 PE=1 SV=3
B0CM26	Cilia- and flagella-associated protein 69 OS=Papio anubis OX=9555 GN=CFAP69 PE=3 SV=1
Q8BH53	Cilia- and flagella-associated protein 69 OS=Mus musculus OX=10090 GN=Cfap69 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004427 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21049 all species →	CFA69_ARM_rpt	Cilia- and flagella-associated protein 69, ARM repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048732 all species →	Family	Cilia- and flagella-associated protein 69	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR048733 all species →	Domain	Cilia- and flagella-associated protein 69, ARM repeats domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14716 all species →	CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 69	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0097225 all species →	Cellular Component	sperm midpiece	Interproscan
GO:0097730 all species →	Cellular Component	non-motile cilium	Interproscan
GO:1902093 all species →	Biological Process	positive regulation of flagellated sperm motility	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24227	CFAP69; cilia- and flagella-associated protein 69	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g2611.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

40TPM > 0

3Conditions

94.0Max TPM

19.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	18	19.83	94.05
whole organisms · low pH treatment	15	13	17.35	89.75
whole organisms · extra low pH treatment pH treatment	12	9	21.38	87.05

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	94.05
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	77.98
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	74.54
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	42.41
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	36.84
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	33.15
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	31.39
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	5.02
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	3.35
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	3.05
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	3.01
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	2.83
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	2.12
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	1.75
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	1.57
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	1.47
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	1.25
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	0.61
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	0.00
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	0.00
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	0.00
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	89.75
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	79.24
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	76.32
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	3.38
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	3.36
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	2.54
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	1.14
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	1.01
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	1.00
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	0.97
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	0.60
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	0.59
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	0.35
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	0.00
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	0.00
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	87.05
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	80.14
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	77.43
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	4.09
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	2.51
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	1.63
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	1.35
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	1.33
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	0.99
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	0.00
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	0.00
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.