Gene detail

Detailed information of g2619.t1 in Montipora capitata

Genomic Location: Sc0000040:656485...670685
NR annotation: XP_015772255.1, PREDICTED: transcription factor CP2-like isoform X3 [Acropora digitifera]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NZH6	Transcription factor CP2 OS=Xenopus tropicalis OX=8364 GN=tfcp2 PE=2 SV=1
Q9NZI7	Upstream-binding protein 1 OS=Homo sapiens OX=9606 GN=UBP1 PE=1 SV=1
Q4V860	Transcription factor CP2 OS=Xenopus laevis OX=8355 GN=tfcp2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003772 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18016 all species →	SAM_3	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF04516 all species →	CP2	CP2 transcription factor	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041418 all species →	Domain	SAM domain	Interproscan
IPR007604 all species →	Domain	CP2 transcription factor	Interproscan
IPR040167 all species →	Family	Transcription factor CP2-like	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11037 all species →	TRANSCRIPTION FACTOR CP2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0001228 all species →	Molecular Function	DNA-binding transcription activator activity, RNA polymerase II-specific	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09275	TFCP2; transcription factor CP2 and related proteins	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.