Gene detail

Detailed information of g262.t1 in Acropora digitifera

Genomic Location: chr1Alt:3883482...3887656
NR annotation: XP_044180366.1, uncharacterized protein LOC122961663 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g262.t1

ATGGGTTTCTACCTTTTTCATATCGTAGCTTTTAGTGCTACATTGTTTTTTGTTCGATCCCAACAGTCCAATTTTTCCGAGCACAATGAAATACACCGCGCAAGAAGTCAGATCGACTCGCTCGTTTACAAATTAACTTTGGATTTGAACAACTTTATCCAAAAGAAAAATCTCGCTCACGCCACGGAGAAAGAAGCCCAGAGATTGGCTCGAATCGCTCGAGAGGAAATTGCTATGCTGACACCAGTTCAGCACGTCTTAGAAAAGCTAGCCAAGGGGAACATTTCCAGTGGGTATCTCTGGCCGACGACAAGGTCTGGTAAAATGATGTTGCGAATTAAAGCGAAGGGATCGGAACTACCGAAGCATTACACCATAGCAATACCAGTAAATCACAGAGAACTAATTGATCGTGGATTAACTCGCGAGGACGGAGATGATTTGCAAGTCTATTACCATGACAACGGCCGACGTCCAGTACAAGTCGATCGCGTCATCAAAGGCCTGGGGACAAGGGCAGCCACTGTCCTGTTCAGACTGCAGACTTCTATATCAGCTTTCACTGTTGACAGCTCCTCGTACTTCTTGGTGCTCGGTCGTGTGGTCAGAGGCAGCACCATGTATGACCCCAGCAAAGTATACGCTTTCTACGATGATTTCTCCAGTTCAATGATGAAAAAGGAATGGGTTAAGGTCTGGGGAAAGTGGAGTGTACAAAACGGGCGCCTGCTGGGAAACACAATGAAAAGCAAAGATGCAAGCAAAGACTCTGCAGAGGTCGGGGTCTATCTCAAGTCGGGTTTTCATTGGAAAGACGTTGAAGTAGAGCTTGACTTGATGGAAATAAGTCAGTCAGGAAAAGCTGCGACTGGGCCGTTTCTACGTTTAAGTAACGTGGACCTCCGCAAGACCACAGGGTGGTGGTTGCAATATAACTTGGACTACCAAACCTGCAGCTTGAGACCATTCGTCAATAATCGCGATGGTAACTGGAAATACGCAGCAAGGTTACCTACAGCCTTTACTAGAAACAAATGGTTCCATCTCAAGTATCGAGTGATTGGAAACAGATTTTGGCAATGGGCAAATGGCAAACTGGTGCATAACAATTTCAAAGTGGAAAAACAATGGGATATACTCAAAGGAACCGTAGGATTAGGCTGTCACAAGTCTCCACGCAACATTAAAACACTATATGACAACATCAAGGTTACACTCGTGGTTGCTTCAGCTCCAAACGTCACTTTGGGAAAGCTTGAAACTTTCCTACCAATCAAAGGCGCTTTTCTGGGTCAGAAGGAATTGCCCGCGGACTCGTGCAAGCAGATCCACGACGCAAGTCTGGTCAACAACAAACCTCGCTCAAAGAATGGTGTTTATTGGATCAAGACAGACCTACAAGGAAGCGCGGCAGTGCAGACCTACTGCGACATGGAAAATGGCGGATGGACTCTGGTCGGGAAAATCAGCGGAAAGGTCGGCAACATTTACAACAAATGGCTGGTATCAAACCACAACACCGCAGAGCTAAAGGCTTCAAAGATCACAAAACGCAATCAGTTCGCCTGCCTCGACGCGCGCAGTTTGGCGGTAGAAGAAGCGTCCACGGTGCTGTTGTCCAGCGGTGACAAGATGAATGGTTTAGGAAGTAAGTGGGTGATGTGGCGGTTGCCTGGCGACAGAGAAAAAGCCTCCTTTTGGGACCATTCTGTGGGCTCATCATCAGTGAAAGCCGCTGTAAAGACACCAGTGATGGTGTACGCTTGGAATGGACAGAAAAAGAATTGTTACCAAAATAAGTTTGGTATCATGCCATTAAAAACACATGGCGGATCATATCCTTACACATCTCAAAACACCGCTGGGAACACAGCAACCAATGACAACTGCATGGCTGTTGGTGTCATGAAGAAACATTCCACTGCGCATGGCTGGTCACAGGATGGCAACGGCTTCGATAGTGCAAGCAGCGATTCTGATTGGCTCAATAGGTCATACTCTCACCAGTCCCCTAATGTGGTTGTCTGGCTAAAGTAA

Transcript

chr1Alt.g262.t1

AACGAACAGAGTTAATTTAACCAGCTGGAAACTTTCTCCAAATGGGTTTCTACCTTTTTCATATCGTAGCTTTTAGTGCTACATTGTTTTTTGTTCGATCCCAACAGTCCAATTTTTCCGAGCACAATGAAATACACCGCGCAAGAAGTCAGATCGACTCGCTCGTTTACAAATTAACTTTGGATTTGAACAACTTTATCCAAAAGAAAAATCTCGCTCACGCCACGGAGAAAGAAGCCCAGAGATTGGCTCGAATCGCTCGAGAGGAAATTGCTATGCTGACACCAGTTCAGCACGTCTTAGAAAAGCTAGCCAAGGGGAACATTTCCAGTGGGTATCTCTGGCCGACGACAAGGTCTGGTAAAATGATGTTGCGAATTAAAGCGAAGGGATCGGAACTACCGAAGCATTACACCATAGCAATACCAGTAAATCACAGAGAACTAATTGATCGTGGATTAACTCGCGAGGACGGAGATGATTTGCAAGTCTATTACCATGACAACGGCCGACGTCCAGTACAAGTCGATCGCGTCATCAAAGGCCTGGGGACAAGGGCAGCCACTGTCCTGTTCAGACTGCAGACTTCTATATCAGCTTTCACTGTTGACAGCTCCTCGTACTTCTTGGTGCTCGGTCGTGTGGTCAGAGGCAGCACCATGTATGACCCCAGCAAAGTATACGCTTTCTACGATGATTTCTCCAGTTCAATGATGAAAAAGGAATGGGTTAAGGTCTGGGGAAAGTGGAGTGTACAAAACGGGCGCCTGCTGGGAAACACAATGAAAAGCAAAGATGCAAGCAAAGACTCTGCAGAGGTCGGGGTCTATCTCAAGTCGGGTTTTCATTGGAAAGACGTTGAAGTAGAGCTTGACTTGATGGAAATAAGTCAGTCAGGAAAAGCTGCGACTGGGCCGTTTCTACGTTTAAGTAACGTGGACCTCCGCAAGACCACAGGGTGGTGGTTGCAATATAACTTGGACTACCAAACCTGCAGCTTGAGACCATTCGTCAATAATCGCGATGGTAACTGGAAATACGCAGCAAGGTTACCTACAGCCTTTACTAGAAACAAATGGTTCCATCTCAAGTATCGAGTGATTGGAAACAGATTTTGGCAATGGGCAAATGGCAAACTGGTGCATAACAATTTCAAAGTGGAAAAACAATGGGATATACTCAAAGGAACCGTAGGATTAGGCTGTCACAAGTCTCCACGCAACATTAAAACACTATATGACAACATCAAGGTTACACTCGTGGTTGCTTCAGCTCCAAACGTCACTTTGGGAAAGCTTGAAACTTTCCTACCAATCAAAGGCGCTTTTCTGGGTCAGAAGGAATTGCCCGCGGACTCGTGCAAGCAGATCCACGACGCAAGTCTGGTCAACAACAAACCTCGCTCAAAGAATGGTGTTTATTGGATCAAGACAGACCTACAAGGAAGCGCGGCAGTGCAGACCTACTGCGACATGGAAAATGGCGGATGGACTCTGGTCGGGAAAATCAGCGGAAAGGTCGGCAACATTTACAACAAATGGCTGGTATCAAACCACAACACCGCAGAGCTAAAGGCTTCAAAGATCACAAAACGCAATCAGTTCGCCTGCCTCGACGCGCGCAGTTTGGCGGTAGAAGAAGCGTCCACGGTGCTGTTGTCCAGCGGTGACAAGATGAATGGTTTAGGAAGTAAGTGGGTGATGTGGCGGTTGCCTGGCGACAGAGAAAAAGCCTCCTTTTGGGACCATTCTGTGGGCTCATCATCAGTGAAAGCCGCTGTAAAGACACCAGTGATGGTGTACGCTTGGAATGGACAGAAAAAGAATTGTTACCAAAATAAGTTTGGTATCATGCCATTAAAAACACATGGCGGATCATATCCTTACACATCTCAAAACACCGCTGGGAACACAGCAACCAATGACAACTGCATGGCTGTTGGTGTCATGAAGAAACATTCCACTGCGCATGGCTGGTCACAGGATGGCAACGGCTTCGATAGTGCAAGCAGCGATTCTGATTGGCTCAATAGGTCATACTCTCACCAGTCCCCTAATGTGGTTGTCTGGCTAAAGTAACCAAACCATCTCATTTTTTGCGCTTTCGTTTTTATTTGCTTGCGTTTTCTAGCTTGTATTGGCAGAGGTTGATTATTAGCCAAGGATGATTTTAATTTAAGGACTGCACTGAATTAGTTGCTTTAAGACTTTTATAAGTGTCACGAAATGTCCCCTCAATCCCCTCTCGACTTCATCCTCAGACAGAAATAAGACCACCACTTGACAGTTTTGCTTTCCCAATAATGAAATCACATTCTC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06439 all species →	3keto-disac_hyd	3-keto-disaccharide hydrolase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010496 all species →	Domain	3-keto-disaccharide hydrolase	Interproscan
IPR036056 all species →	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16146 all species →	INTELECTIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0070492 all species →	Molecular Function	oligosaccharide binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g262.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g262.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

212.5Max TPM

75.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	75.34	212.47

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	212.47
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	159.54
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	156.17
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	153.19
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	144.48
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	133.95
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	133.33
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	121.26
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	120.02
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	119.66
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	87.30
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	86.16
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	84.24
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	79.44
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	74.30
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	69.47
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	68.44
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	67.70
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	66.82
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	60.82
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	56.70
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	53.30
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	52.53
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	52.07
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	50.78
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	47.48
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	45.99
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	44.76
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	40.98
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	40.23
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	38.40
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	37.38
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	36.25
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	32.27
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	30.86
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	26.28
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	23.86
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	15.23
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	14.15

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.