Gene detail

Detailed information of g26257.t1 in Acropora digitifera

Genomic Location: chr12Alt:18970999...19002628
NR annotation: XP_015778312.1, PREDICTED: ubiquitin conjugation factor E4 B-like [Acropora digitifera]
Species abbreviation ADIGI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g26257.t1

ATGCAAAATACAGCAGTTTATGCACCAATCACATTTGAGGAAATTGTTAGACGTCGTCGTCTAGCCAGGCTTAATCAAGGTGGTCTATCAGCATCTACTTCAGAGAGTCAGACAATTTCCATGAGAACAAACTTGAAACCTGTTACAGAAGACTCACCTGTTGATACCCAAGACAGTGGTTATGGATCTTTACAACAATCTTTTGACATTGATGACCACTCCCAAGAGACTGGAGATAAGTGTGGAAAGCGTACTTCACCAACAAGTTCATCCTCTCCTTCAGAAAGTTGTAAATTCAAGAGAACAAAGGATGCATTTGATAAAGAAGATTCAGCGCACGTAAAGGTGAACGTGCAGAATGTAACAAGTGAGCAGATTGTGAAAAGTCTCTCAAATGTATTTAAAGTTTCTCTAAAGAGCTCTGATGTTTCACCGGATTCAGTTTATTTGCCTTCCTTGGAAAGCAGCCTCTCTGAAATGGATCTCACAACAGGAAGTGTTTGCAACCTTATAAGTCAGGTTATAATGGAGAGATTGTTGCAGTTTCAAAACCAGGAGAGTGTGGAGAAGTCAAATACAACTTTAACAATTGCTGAGGAGACTTCACAAATGGCTATTGATGACACATTTTGTGATCGGCTGCTATCTGCTGAGTCTGGCAGTCAACCTGCTGAAGGCAAAAGTTGTTTACCATCTCCAAGAGACACCCCTTCCATGTACCAGACCAAGATTCTCAAATATTTGGCTTGCAGTTATAATGAAACTATGAATGAAGAGAAGAATTACCCCAAGAGATCTCAAGAGGAGAGATGGGTTACCGCCATGTCACAGTCTCGGCATCAATGTGTGTCATTTTCATTGAGTGTCCTTCAAGGTTGCTTCATTTCTCAAAGGTCTGTCTTGGACAAATCGCCATTGGTGTCACTTCTTATAAGTGATGATTGTGATGTTCCTTGGCTATTCTTGGTTGATCTTGTTAACCAAACAGCAAAAGACTCAGATCTGTTTAAGGAGGTTTTTGTGCCAGTATTGTTGGGTTTAAACCGAGAAATGCAGAGGCACAACCTTGCTAGTGACAGATACAAGGCTCCTTTGCAAGCGCTTTCTAAATTATGTGATATTCGCCTTGGAACCTCCTCAGTTAGACCAATTTGTAATCTGATGGTTACTTTGCCGATGTGGATACCTTCTCCTTTATCAAGAGCAGAAGGGAGGGAGATCGAGAAGTTATCACTTCTTGGACCTTTCCTTAGTCTTTCAGTCTTTTCAGAAGATTGTCCTCAGATTGCAGACAAGTATTTTTCAGAATCCTCAGACAATGTAAAGCTTGTGAATGTCACATTAAGGAATGCTCTTCACTTAGTTAGGACAGAGGTTTTTAAAATAATTCACAGTATGTTAGTATCCTCAGAGAGTCGGGATTCTTGTCTTACCTTTATCGCTACAGCACTGCAGAGAAATCATCGCAAAGCCCAACTACAGGTTGATGATAGACAAGTTGCCTCAGATGGATTCATGTTAAATGTCATGACTGTGTTACAGCAGCTCTGTGCAAAAGTGAAAATTGAGAAGGTGGATAGCTTATACCTTCATAGTCCAAAGTCAAGACTAAACATTTCCCAAGAATCTTGTCTCAAACTTACGTCACAAGAACTTGCAACATGGAAAGAACAATTGGAGAGAGAAAGTTCCTGGATAGAGCCTAAATTTCCCACTGAATGCTTTTTTATGGCAATCCAAGTTCATCATGTAGCATTGCTGCCAGCATGTAGACGACATTCACGCAGACAGAGAGCTCAGCGGGAGTTAAGTCGCATGATTGAGCATTTAGAGTCACATGAGAGTGAATGGGTGGAAACTCCAATGGCATCGAGAAATAAGAGCTTGTTAAAGAAATGGAAAGACCAGCTAAAGAAACTTGAGAATGGTAAGGCATGTTCAGATGTTGGTTTGCTAGATGAGGAGATGTTACGGGGCTGTTTAAAGTTCTATGCCTTTTTGGTGACTTGGTTCTTGAAGCTTGTTAATCCAGGCAAAAGCAAGCTCAAGCTTCCTCTTCCAGAGCGCATATCAATGCAGCTTGCATCCCTGCCAGATTACTTTGTTGGTGACGTGGCAGAGTTTCTACTCTTTGTAAACATGCATGCTTTTCAAGTTCTGGAGGATCCTGTTATGAATGATGTGATTACCTTTCTTGTTGTGTTTGTGTGCTCTCCAAATTACATCTCAAATCCTTATCTTGTGGCAAAAATTGTGGAGGTTTTGTTTGTCATGAACCCAAACATTCAGCCAGTGGCATCTAAAATTCACGAGATGATCCTCAGGCATCCACTAGCTTTAGATAACTTGGCTCCTGCGTTAATGAACTTCTATACAGATGTGGAAACAACTGGTAGCTCTAATGAGTTCTATGACAAATTCAGCATAAGATATCACATCTCTATCATTATGAAGAGTTTGTGGGAAGACTTGGGTCACAGGCAAGCCATCATGAAGCAGAGCAGCCTGGATCAGTTTGTTCGCTTTGTAAACATGTTGATCAATGACACTACATTTCTATTGGATGAATCACTTAACTCGTTGAAAAGCATCAATGAAACACAACAGATGATGGCGAATGGGACTGAATGGGAAGCACTTGCAAGAGAAGTGCGCACCTCTCGTTTGCGGCAACTTGCAACAGATGAACGCCAGTGCCGGTCATACTTAACTCTCGCTTCAGAAACTTTAGAAATGATGCTGTATTTAACAAAACATGTCCAGCGACCTTTCTTAAGACCTGAATTGATCGATCGGATAGCTGCCATGTTGAACTTTAACCTGCAGCAACTGTGTGGACCAAAGTGTAGAAATTTAAAGGTTAAAAATCCCGAAAAATATGGCTTTGAACCGAAGACTCTGCTTGATAGATTGACACAGATTTACGTGAACCTTGATTCGGAGGAATTTGCACAGGCTGTTGCTAGAGACCAGCGATCATACAAGAAAGAGTTGTTTGACGATGCTGCAAAACATTTGCATAAAACGCTACTCAAAACTGAGGCAGAGATTCATCTTTTCAAAGAATTTGCGGCTAAAGTAGAGAGAAAAGTAAAAGAAAATGCTTCTATGGAAGAAGATTTTGATGACGCACCTGACGAATTCAAAGACCCGTTGATGATGACACTCATGCAGGAGCCAGTGATATTACCAACAAGCGGCAAAATCATGGACCGTCCAGTTATCATGCGTCATTTGTTAAATTCAGATACAGATCCTTTTAACAGACAAGTGCTGACCATCGAGATGCTGCAGCCAGCTACTGAACTCAAGCAGCAGATTGACGAGTGGCTTAAATCACGAAGAAACAAACCACAGTTGGAGCACATCAACTCCAAAAAGTCATCTGCGCGGCAATGA

Transcript

chr12Alt.g26257.t1

ATCGAATCGGTTACTTAGTAACTAACAATATATTTAGAAAACGTTAATCAATCAAATAATCATTTTAATTGTAATCAATGTGGTGATTGGTGGATTTAGATGACAGGACTTAAAATGATTGGCTTATGTAACTGTCCAATTAAAGGTGTCCGATTACAGCCAACTGTCCGATTACACTGTCCAATTACAACTTTGCAGATTAATTAATGCAAAATACAGCAGTTTATGCACCAATCACATTTGAGGAAATTGTTAGACGTCGTCGTCTAGCCAGGCTTAATCAAGGTGGTCTATCAGCATCTACTTCAGAGAGTCAGACAATTTCCATGAGAACAAACTTGAAACCTGTTACAGAAGACTCACCTGTTGATACCCAAGACAGTGGTTATGGATCTTTACAACAATCTTTTGACATTGATGACCACTCCCAAGAGACTGGAGATAAGTGTGGAAAGCGTACTTCACCAACAAGTTCATCCTCTCCTTCAGAAAGTTGTAAATTCAAGAGAACAAAGGATGCATTTGATAAAGAAGATTCAGCGCACGTAAAGGTGAACGTGCAGAATGTAACAAGTGAGCAGATTGTGAAAAGTCTCTCAAATGTATTTAAAGTTTCTCTAAAGAGCTCTGATGTTTCACCGGATTCAGTTTATTTGCCTTCCTTGGAAAGCAGCCTCTCTGAAATGGATCTCACAACAGGAAGTGTTTGCAACCTTATAAGTCAGGTTATAATGGAGAGATTGTTGCAGTTTCAAAACCAGGAGAGTGTGGAGAAGTCAAATACAACTTTAACAATTGCTGAGGAGACTTCACAAATGGCTATTGATGACACATTTTGTGATCGGCTGCTATCTGCTGAGTCTGGCAGTCAACCTGCTGAAGGCAAAAGTTGTTTACCATCTCCAAGAGACACCCCTTCCATGTACCAGACCAAGATTCTCAAATATTTGGCTTGCAGTTATAATGAAACTATGAATGAAGAGAAGAATTACCCCAAGAGATCTCAAGAGGAGAGATGGGTTACCGCCATGTCACAGTCTCGGCATCAATGTGTGTCATTTTCATTGAGTGTCCTTCAAGGTTGCTTCATTTCTCAAAGGTCTGTCTTGGACAAATCGCCATTGGTGTCACTTCTTATAAGTGATGATTGTGATGTTCCTTGGCTATTCTTGGTTGATCTTGTTAACCAAACAGCAAAAGACTCAGATCTGTTTAAGGAGGTTTTTGTGCCAGTATTGTTGGGTTTAAACCGAGAAATGCAGAGGCACAACCTTGCTAGTGACAGATACAAGGCTCCTTTGCAAGCGCTTTCTAAATTATGTGATATTCGCCTTGGAACCTCCTCAGTTAGACCAATTTGTAATCTGATGGTTACTTTGCCGATGTGGATACCTTCTCCTTTATCAAGAGCAGAAGGGAGGGAGATCGAGAAGTTATCACTTCTTGGACCTTTCCTTAGTCTTTCAGTCTTTTCAGAAGATTGTCCTCAGATTGCAGACAAGTATTTTTCAGAATCCTCAGACAATGTAAAGCTTGTGAATGTCACATTAAGGAATGCTCTTCACTTAGTTAGGACAGAGGTTTTTAAAATAATTCACAGTATGTTAGTATCCTCAGAGAGTCGGGATTCTTGTCTTACCTTTATCGCTACAGCACTGCAGAGAAATCATCGCAAAGCCCAACTACAGGTTGATGATAGACAAGTTGCCTCAGATGGATTCATGTTAAATGTCATGACTGTGTTACAGCAGCTCTGTGCAAAAGTGAAAATTGAGAAGGTGGATAGCTTATACCTTCATAGTCCAAAGTCAAGACTAAACATTTCCCAAGAATCTTGTCTCAAACTTACGTCACAAGAACTTGCAACATGGAAAGAACAATTGGAGAGAGAAAGTTCCTGGATAGAGCCTAAATTTCCCACTGAATGCTTTTTTATGGCAATCCAAGTTCATCATGTAGCATTGCTGCCAGCATGTAGACGACATTCACGCAGACAGAGAGCTCAGCGGGAGTTAAGTCGCATGATTGAGCATTTAGAGTCACATGAGAGTGAATGGGTGGAAACTCCAATGGCATCGAGAAATAAGAGCTTGTTAAAGAAATGGAAAGACCAGCTAAAGAAACTTGAGAATGGTAAGGCATGTTCAGATGTTGGTTTGCTAGATGAGGAGATGTTACGGGGCTGTTTAAAGTTCTATGCCTTTTTGGTGACTTGGTTCTTGAAGCTTGTTAATCCAGGCAAAAGCAAGCTCAAGCTTCCTCTTCCAGAGCGCATATCAATGCAGCTTGCATCCCTGCCAGATTACTTTGTTGGTGACGTGGCAGAGTTTCTACTCTTTGTAAACATGCATGCTTTTCAAGTTCTGGAGGATCCTGTTATGAATGATGTGATTACCTTTCTTGTTGTGTTTGTGTGCTCTCCAAATTACATCTCAAATCCTTATCTTGTGGCAAAAATTGTGGAGGTTTTGTTTGTCATGAACCCAAACATTCAGCCAGTGGCATCTAAAATTCACGAGATGATCCTCAGGCATCCACTAGCTTTAGATAACTTGGCTCCTGCGTTAATGAACTTCTATACAGATGTGGAAACAACTGGTAGCTCTAATGAGTTCTATGACAAATTCAGCATAAGATATCACATCTCTATCATTATGAAGAGTTTGTGGGAAGACTTGGGTCACAGGCAAGCCATCATGAAGCAGAGCAGCCTGGATCAGTTTGTTCGCTTTGTAAACATGTTGATCAATGACACTACATTTCTATTGGATGAATCACTTAACTCGTTGAAAAGCATCAATGAAACACAACAGATGATGGCGAATGGGACTGAATGGGAAGCACTTGCAAGAGAAGTGCGCACCTCTCGTTTGCGGCAACTTGCAACAGATGAACGCCAGTGCCGGTCATACTTAACTCTCGCTTCAGAAACTTTAGAAATGATGCTGTATTTAACAAAACATGTCCAGCGACCTTTCTTAAGACCTGAATTGATCGATCGGATAGCTGCCATGTTGAACTTTAACCTGCAGCAACTGTGTGGACCAAAGTGTAGAAATTTAAAGGTTAAAAATCCCGAAAAATATGGCTTTGAACCGAAGACTCTGCTTGATAGATTGACACAGATTTACGTGAACCTTGATTCGGAGGAATTTGCACAGGCTGTTGCTAGAGACCAGCGATCATACAAGAAAGAGTTGTTTGACGATGCTGCAAAACATTTGCATAAAACGCTACTCAAAACTGAGGCAGAGATTCATCTTTTCAAAGAATTTGCGGCTAAAGTAGAGAGAAAAGTAAAAGAAAATGCTTCTATGGAAGAAGATTTTGATGACGCACCTGACGAATTCAAAGACCCGTTGATGATGACACTCATGCAGGAGCCAGTGATATTACCAACAAGCGGCAAAATCATGGACCGTCCAGTTATCATGCGTCATTTGTTAAATTCAGATACAGATCCTTTTAACAGACAAGTGCTGACCATCGAGATGCTGCAGCCAGCTACTGAACTCAAGCAGCAGATTGACGAGTGGCTTAAATCACGAAGAAACAAACCACAGTTGGAGCACATCAACTCCAAAAAGTCATCTGCGCGGCAATGAGATGGCATTCTTACGGGCCACCGTAGTCGGCTGCGATCAGGTGTCACAGAACATGTGATCTTCATCGCAAAGCCGTTCACGAAGGCATTTACAAAAGACACACAAAGTTAATTGGAACAGCGCACAGAAGGCAACTGAGTCTTTGATCGATGCTGCTGTTCTGGGAACATTTTTCGTATTTATTTTAACTGTTCCGAGAACTGTAAGGAACAAACAATCAACAACAGTTCATTTTGAAATGTTGGTTTCGTATTCTACCTGAAGTGTTGCAGCAGTGTTTTTTTGCTACATCTTTGGTTGTCACAACACACTTAGGCCGAGTTGTTCGAACCAAGCACTAATCCTGGTTAAATACTATCCTGGAATAAGCGCTAACCCAGCTTCGAACAACTCGGCCTTGAACTACCAATCCCCTTTTGATCCCCGATAACAGGTCACTTGGGAATATAAATAAATTTTATTCAACACG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9ES00	Ubiquitin conjugation factor E4 B OS=Mus musculus OX=10090 GN=Ube4b PE=1 SV=3
O95155	Ubiquitin conjugation factor E4 B OS=Homo sapiens OX=9606 GN=UBE4B PE=1 SV=1
Q9HE05	Ubiquitin conjugation factor E4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ufd2 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04564 all species →	U-box	U-box domain	Domain	Interproscan
PF10408 all species →	Ufd2P_core	Ubiquitin elongating factor core	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003613 all species →	Domain	U-box domain	Interproscan
IPR045132 all species →	Family	Ubiquitin conjugation factor E4	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR019474 all species →	Domain	Ubiquitin conjugation factor E4, core	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13931 all species →	UBIQUITINATION FACTOR E4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0034450 all species →	Molecular Function	ubiquitin-ubiquitin ligase activity	Interproscan
GO:0036503 all species →	Biological Process	ERAD pathway	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10597	UBE4B, UFD2; ubiquitin conjugation factor E4 B	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.