Gene detail

Detailed information of g263.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_031573601.1, ATP-dependent RNA helicase DDX51-like [Actinia tenebrosa]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DRI7	ATP-dependent RNA helicase DDX51 OS=Danio rerio OX=7955 GN=ddx51 PE=2 SV=1
Q6P9R1	ATP-dependent RNA helicase DDX51 OS=Mus musculus OX=10090 GN=Ddx51 PE=1 SV=1
Q8N8A6	ATP-dependent RNA helicase DDX51 OS=Homo sapiens OX=9606 GN=DDX51 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000024 (this species only)
Orthogroup (gene family)	OG0001625 (this species only)
Orthogroup (gene family)	OG0003133 (this species only)
Orthogroup (gene family)	OG0004162 (this species only)
Orthogroup (gene family)	OG0005828 (this species only)
Orthogroup (gene family)	OG0006738 (this species only)
Orthogroup (gene family)	OG0007725 (this species only)
Orthogroup (gene family)	OG0008803 (this species only)
Orthogroup (gene family)	OG0010310 (this species only)
Orthogroup (gene family)	OG0012807 (this species only)
Orthogroup (gene family)	OG0017063 (this species only)
Orthogroup (gene family)	OG0029711 (this species only)
Orthogroup (gene family)	OG0171427 (this species only)
Orthogroup (gene family)	OG0173182 (this species only)
Orthogroup (gene family)	OG0173778 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF17004 all species →	SRP_TPR_like	Putative TPR-like repeat	Repeat	Interproscan
PF15696 all species →	RAD51_interact	RAD51 interacting motif	Family	Interproscan
PF03820 all species →	SFXNs	Sideroflexins	Family	Interproscan
PF15139 all species →	CFAP95	Protein CFAP95	Family	Interproscan
PF02779 all species →	Transket_pyr	Transketolase, pyrimidine binding domain	Domain	Interproscan
PF02780 all species →	Transketolase_C	Transketolase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR050079 all species →	Family	DEAD box RNA helicase	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR052055 all species →	Family	Hepadnavirus polymerase/reverse transcriptase	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR026270 all species →	Family	Signal recognition particle, SRP72 subunit	Interproscan
IPR031545 all species →	Repeat	Signal recognition particle subunit SRP72, TPR-like repeat	Interproscan
IPR031419 all species →	Domain	RAD51 interacting motif	Interproscan
IPR004686 all species →	Family	Tricarboxylate/iron carrier	Interproscan
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR021281 all species →	Family	Small nuclear RNA activating complex subunit 2	Interproscan
IPR027905 all species →	Family	Cilia- and flagella-associated protein 95	Interproscan
IPR009014 all species →	Homologous_superfamily	Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II	Interproscan
IPR027110 all species →	Family	Pyruvate dehydrogenase E1 component subunit beta	Interproscan
IPR029061 all species →	Homologous_superfamily	Thiamin diphosphate-binding fold	Interproscan
IPR005475 all species →	Domain	Transketolase-like, pyrimidine-binding domain	Interproscan
IPR033248 all species →	Domain	Transketolase, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47959 all species →	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Interproscan
PTHR33050 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR14094 all species →	SIGNAL RECOGNITION PARTICLE 72	Interproscan
PTHR11153 all species →	SIDEROFLEXIN	Interproscan
PTHR15132 all species →	SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 2	Interproscan
PTHR35069 all species →	PROTEIN C9ORF135	Interproscan
PTHR11624 all species →	DEHYDROGENASE RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005786 all species →	Cellular Component	signal recognition particle, endoplasmic reticulum targeting	Interproscan
GO:0006614 all species →	Biological Process	SRP-dependent cotranslational protein targeting to membrane	Interproscan
GO:0008312 all species →	Molecular Function	7S RNA binding	Interproscan
GO:0043022 all species →	Molecular Function	ribosome binding	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0015075 all species →	Molecular Function	monoatomic ion transmembrane transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0022889 all species →	Molecular Function	obsolete serine transmembrane transporter activity	Interproscan
GO:0031305 all species →	Cellular Component	obsolete integral component of mitochondrial inner membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0140300 all species →	Biological Process	serine import into mitochondrion	Interproscan
GO:1990542 all species →	Biological Process	mitochondrial transmembrane transport	Interproscan
GO:0009301 all species →	Biological Process	snRNA transcription	Interproscan
GO:0016251 all species →	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0016604 all species →	Cellular Component	nuclear body	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0004739 all species →	Molecular Function	pyruvate dehydrogenase (acetyl-transferring) activity	Interproscan
GO:0005967 all species →	Cellular Component	obsolete mitochondrial pyruvate dehydrogenase complex	Interproscan
GO:0006086 all species →	Biological Process	acetyl-CoA biosynthetic process from pyruvate	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14807	DDX51, DBP6; ATP-dependent RNA helicase DDX51/DBP6	EC:5.6.2.7	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.