Gene detail

Detailed information of g26348.t1 in Acropora digitifera

Genomic Location: chr12Alt:20388453...20391559
NR annotation: XP_022808013.1, uncharacterized protein LOC111345029 [Stylophora pistillata]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06032 all species →	DUF917	Protein of unknown function (DUF917), N-terminal	Domain	Interproscan
PF20906 all species →	DUF917_C	Protein of unknown function DUF917, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010318 all species →	Domain	DUF917, N-terminal domain	Interproscan
IPR024071 all species →	Homologous_superfamily	DUF917, C-terminal domain superfamily	Interproscan
IPR048350 all species →	Domain	DUF917, C-terminal domain	Interproscan
IPR045079 all species →	Family	Oxoprolinase family	Interproscan
IPR027479 all species →	Homologous_superfamily	DUF917, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11365 all species →	5-OXOPROLINASE RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006749 all species →	Biological Process	glutathione metabolic process	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0017168 all species →	Molecular Function	5-oxoprolinase (ATP-hydrolyzing) activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g26348.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g26348.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

26TPM > 0

1Conditions

253.0Max TPM

108.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	26	108.22	252.99

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	252.99
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	247.08
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	243.40
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	239.22
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	237.72
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	231.41
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	227.91
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	224.84
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	224.05
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	217.86
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	214.41
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	199.57
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	198.59
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	173.81
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	116.06
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	114.31
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	107.54
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	100.97
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	99.12
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	98.98
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	96.86
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	92.64
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	90.50
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	85.19
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	84.06
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	1.68
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.