Gene detail

Detailed information of g26366.t1 in Acropora digitifera

Genomic Location: chr12Alt:20645735...20658997
NR annotation: XP_029193981.2, ephrin type-B receptor 1-B-like isoform X2 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g26366.t1

ATGGTGCTGAAGATGGTGTGGAAAGCGTGGATTCTAGAGCTGACATTGGGTTGGATTTTCCTTCATTTTTCAACTGGAGAAAGAGCCATTCTGTTACAAAGACCCACACCTGGAGTGATTGGGCCTGCAAGCTGGTTTTGGGCAACAAGGAAAGAAAGTGATGATCCAATGGGAGCTGGGTGGCTGGCCCCTTCTGAGGGTAAATCAACTTATTCTGTGTGCGATATCAAAGCTAAGAAACCAAGCAACTGGTTGACAAGTGATAGTTTGTATCCAAGAAACGTGAAAGAAATCCACATCACTATCAACTATACAATATCGCTAAGATGTGCATCTCTCAGAAAAGATTCTCACAGACGAAACTGCAAGGAAGAATTTGATGTGTATGGCTATCAGATTTTGGGGGAAGCCAATGGCTCAAATTTGGATCAAAAAAAGGGAAATTTCAGTAAAATAAAGACAGTTTCACCGTCTGGAAATATCTCAAACATGTCTGCCATTCCTTGGGAAGTTGCTAAATTTTCACTGCCTATCAAGGAAAGAACATCCCGTGTGATTCTTGCCATTCATGACAGTGGCGCGTGTATTGTCTTGAATTCTTTTATGGTTACATACAGTGTTTGCCCGGACATGGTTTTACCTGACAGTCTATTAATTCTGCCGCAAACTGTAGCTCCAACAAATGAGTCTGAAATTGTGAGAGTTTCTGGCAAATGTGTGGATAATTCAAAAGAGACATTGCAAGGGCCGGAGGCCATTTGTGGGAAAAATGGAAAATGGATCCTCGCAGACAGTGCAAAAGAAGCTTGTCTTTGTAACCCAGGATGGCAGAGAGACGTCGATAACTGTCGAGAATGCCCAGTCGGTTCTTTCAAAGAGAACCTTGGAAATACTAGATGTACAAAGTGTCCAATGAACAGCTTTTCAAATGCAGACCGGAAATACTGCAAATGCCGGCAGGGGTTCTTCCGTGCTCCGAGGGAGACCATCGCTGAAAACTGCACAGCTCTTCCTTCCAAACCAAGGCATCTAAAAACGTTAACCAAGAATCAAACAACAGTAGTTCTGTCATGGTCTCATTCTCACCATCGTGGGGGACGAAGCGACTTGTTTTACGAGATAGAGTGCAAGATTGCTTGCCAAAAGGAACAGACAAGCTGCAGCCAGGATTGCGGGTCACAAGTGCTTTTCCTACCGCGACAAAGAAATCTATCCGACACCCAAGCGACCATAACCAAGCTGTTTCCCCAAACATCTTACAGGTTCACGGTCTACGCGAAAAACGGAGTCAGTGGCGTGGCGGAGGGAAAAGGTTTCGCTTCAAAGTTTGCGCACCTGAAGGTCGACACTCTTGAATCAGTTCCGGGAAAGCCCGAGCTTACTGTGAAAAGGATCGACAGCACTTCGGTGCGTGTGTCCTGGAATCTAAAGAATGGAAACGAAGGCATCCATTATTTCTTGGTGACGTATTATCCACTGGAAGATAAATTCGATAGACACATCAAGAACACAACTGAATCAGCCATCACAATCGACGGGCTTCAACCGGACGTTGTATACCAGTTAGTGGTTGTTGCTAAGAACAGGATGGGGTATGGCCCAGTTAGCGAAGAGGTCAATATTCAAGGAAAGGAAACAGTGACAGTCGCTGAAATTCAACAATCCGAAGACAACACGAAGTTGTGGCTTCTGACAGGCGCTGTTGTGGGAGGCACTCTGTTCATCTTCTTTGTCATAGCTATTGTTGTCGTTATTCGAGCGAAGCGAAGAAAGTCAGACCGTAAAAGAGCAAATACCTTTGAAGCAGCTGAACTATTCTCAACCGACGGCCTCGCTCAGTACGTAGATCCAAGCAATTATGGCGACCCAATGGAAGCTGTGAGGACTTTTGCTGCGGAGATTGAAGAAAATCAAATCAAATTAGAAAGCACCATTGGTGGAGGTGAATTCGCCGAAGTGTTTAAGGGATTTTACGATGGCTCAGCTGTTGCAGTGAAAAGACTTAAGCAAGGTTCCAGTCTAAAGGCAATGGACGATTTCATCTCCGAAGCGTCCATCATGGGCCAATTTAAACATGCTAATGTTATCCAACTGAAAGGAGTTGTAACGACAACCCGACCAATGATGATCGTAACAGAGTTTATGGAAGGAGGATCTCTTGACTCTTTCTTAAAGGAACAAAAAGGCAAACTTACAACCCTTCAGCTTATTGGCATGATAAGGGGAGTGGCATCTGGAATGGCATATCTTTCAGCTATTAACTTTATCCACAGGTCCTTTGTCCTGTTTATTGTATTTTAA

Transcript

chr12Alt.g26366.t1

AACGCCGCTGCACCAGTAAGCACATACAGTGCAGTTGAATGGTGCTGAAGATGGTGTGGAAAGCGTGGATTCTAGAGCTGACATTGGGTTGGATTTTCCTTCATTTTTCAACTGGAGAAAGAGCCATTCTGTTACAAAGACCCACACCTGGAGTGATTGGGCCTGCAAGCTGGTTTTGGGCAACAAGGAAAGAAAGTGATGATCCAATGGGAGCTGGGTGGCTGGCCCCTTCTGAGGGTAAATCAACTTATTCTGTGTGCGATATCAAAGCTAAGAAACCAAGCAACTGGTTGACAAGTGATAGTTTGTATCCAAGAAACGTGAAAGAAATCCACATCACTATCAACTATACAATATCGCTAAGATGTGCATCTCTCAGAAAAGATTCTCACAGACGAAACTGCAAGGAAGAATTTGATGTGTATGGCTATCAGATTTTGGGGGAAGCCAATGGCTCAAATTTGGATCAAAAAAAGGGAAATTTCAGTAAAATAAAGACAGTTTCACCGTCTGGAAATATCTCAAACATGTCTGCCATTCCTTGGGAAGTTGCTAAATTTTCACTGCCTATCAAGGAAAGAACATCCCGTGTGATTCTTGCCATTCATGACAGTGGCGCGTGTATTGTCTTGAATTCTTTTATGGTTACATACAGTGTTTGCCCGGACATGGTTTTACCTGACAGTCTATTAATTCTGCCGCAAACTGTAGCTCCAACAAATGAGTCTGAAATTGTGAGAGTTTCTGGCAAATGTGTGGATAATTCAAAAGAGACATTGCAAGGGCCGGAGGCCATTTGTGGGAAAAATGGAAAATGGATCCTCGCAGACAGTGCAAAAGAAGCTTGTCTTTGTAACCCAGGATGGCAGAGAGACGTCGATAACTGTCGAGAATGCCCAGTCGGTTCTTTCAAAGAGAACCTTGGAAATACTAGATGTACAAAGTGTCCAATGAACAGCTTTTCAAATGCAGACCGGAAATACTGCAAATGCCGGCAGGGGTTCTTCCGTGCTCCGAGGGAGACCATCGCTGAAAACTGCACAGCTCTTCCTTCCAAACCAAGGCATCTAAAAACGTTAACCAAGAATCAAACAACAGTAGTTCTGTCATGGTCTCATTCTCACCATCGTGGGGGACGAAGCGACTTGTTTTACGAGATAGAGTGCAAGATTGCTTGCCAAAAGGAACAGACAAGCTGCAGCCAGGATTGCGGGTCACAAGTGCTTTTCCTACCGCGACAAAGAAATCTATCCGACACCCAAGCGACCATAACCAAGCTGTTTCCCCAAACATCTTACAGGTTCACGGTCTACGCGAAAAACGGAGTCAGTGGCGTGGCGGAGGGAAAAGGTTTCGCTTCAAAGTTTGCGCACCTGAAGGTCGACACTCTTGAATCAGTTCCGGGAAAGCCCGAGCTTACTGTGAAAAGGATCGACAGCACTTCGGTGCGTGTGTCCTGGAATCTAAAGAATGGAAACGAAGGCATCCATTATTTCTTGGTGACGTATTATCCACTGGAAGATAAATTCGATAGACACATCAAGAACACAACTGAATCAGCCATCACAATCGACGGGCTTCAACCGGACGTTGTATACCAGTTAGTGGTTGTTGCTAAGAACAGGATGGGGTATGGCCCAGTTAGCGAAGAGGTCAATATTCAAGGAAAGGAAACAGTGACAGTCGCTGAAATTCAACAATCCGAAGACAACACGAAGTTGTGGCTTCTGACAGGCGCTGTTGTGGGAGGCACTCTGTTCATCTTCTTTGTCATAGCTATTGTTGTCGTTATTCGAGCGAAGCGAAGAAAGTCAGACCGTAAAAGAGCAAATACCTTTGAAGCAGCTGAACTATTCTCAACCGACGGCCTCGCTCAGTACGTAGATCCAAGCAATTATGGCGACCCAATGGAAGCTGTGAGGACTTTTGCTGCGGAGATTGAAGAAAATCAAATCAAATTAGAAAGCACCATTGGTGGAGGTGAATTCGCCGAAGTGTTTAAGGGATTTTACGATGGCTCAGCTGTTGCAGTGAAAAGACTTAAGCAAGGTTCCAGTCTAAAGGCAATGGACGATTTCATCTCCGAAGCGTCCATCATGGGCCAATTTAAACATGCTAATGTTATCCAACTGAAAGGAGTTGTAACGACAACCCGACCAATGATGATCGTAACAGAGTTTATGGAAGGAGGATCTCTTGACTCTTTCTTAAAGGAACAAAAAGGCAAACTTACAACCCTTCAGCTTATTGGCATGATAAGGGGAGTGGCATCTGGAATGGCATATCTTTCAGCTATTAACTTTATCCACAGGTCCTTTGTCCTGTTTATTGTATTTTAACATTCGATCTGCTGATTGGTGTTAATAATCGCAAGCCACTGTGAAATTTCTGTGGTTAACGCCACCCACCATTTTGAAGCCCGCCCCAGGCTCCGCCGGAGCTTTGTGGAGTTTCCAAGTTTTTGTTTCTCAGTTTAACTCTAAGTCCAATTTTGTTGGCAAGGACCAAACGAATTAAAGAGGAAGCACCAGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CBF3	Ephrin type-B receptor 1 OS=Mus musculus OX=10090 GN=Ephb1 PE=1 SV=1
P54762	Ephrin type-B receptor 1 OS=Homo sapiens OX=9606 GN=EPHB1 PE=1 SV=1
P09759	Ephrin type-B receptor 1 OS=Rattus norvegicus OX=10116 GN=Ephb1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF07699 all species →	Ephrin_rec_like	Tyrosine-protein kinase ephrin type A/B receptor-like	Domain	Interproscan
PF01404 all species →	Ephrin_lbd	Ephrin receptor ligand binding domain	Domain	Interproscan
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan
PF14575 all species →	EphA2_TM	Ephrin type-A receptor 2 transmembrane domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR011641 all species →	Domain	Tyrosine-protein kinase ephrin type A/B receptor-like	Interproscan
IPR001090 all species →	Domain	Ephrin receptor ligand binding domain	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR027936 all species →	Domain	Ephrin receptor, transmembrane domain	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR050449 all species →	Family	Ephrin receptor tyrosine kinases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46877 all species →	EPH RECEPTOR A5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005005 all species →	Molecular Function	transmembrane-ephrin receptor activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0030425 all species →	Cellular Component	dendrite	Interproscan
GO:0048013 all species →	Biological Process	ephrin receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g26366.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g26366.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

50.9Max TPM

30.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	30.94	50.87

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	50.87
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	50.75
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	46.87
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	43.77
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	41.23
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	39.75
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	39.31
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	39.02
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	36.28
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	36.21
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	35.90
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	35.87
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	33.38
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	33.04
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	33.03
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	32.44
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	31.72
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	30.87
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	30.29
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	29.52
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	28.71
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	28.64
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	27.96
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	27.80
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	26.27
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	25.32
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	24.17
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	24.13
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	23.68
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	23.43
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	23.30
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	22.72
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	22.62
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	22.55
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	22.49
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	21.35
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	21.12
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	21.04
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	19.29

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.