Gene detail

Detailed information of g26432.t1 in Acropora digitifera

Genomic Location: chr12Alt:21316345...21329683
NR annotation: XP_029194047.2, endothelin-converting enzyme homolog isoform X2 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g26432.t1

ATGAAATGGGTATTGGGCTTAATAGTGATGGCGAACCTCTTGCTCGCACATTCTCTAACAAAGATCAAAACACATCATGAGCGCAGAAATTACCACAAGAAAACAGATGATGACATTCTAGGCCAACTTGAAGATGTAATAATACGTTTACCTCAACACCATAAATCAGCGCACAAACGGATTTTTCACAAACTCCAAGACATCCCAGAATGCAAGACGGAAAAGTGCTCAGAACAGAGTTGGAATATGTCACAGATGATGGACGCATCCGCTGACCCTTGTCAAGACTTTTATCAGTACGCATGTGGGGGCTGGATTGCCGAGGGGCTCCCAGAAGATCACGCAAAGTGGACTATATTTGCCTATTTGGCTGAACAGACAGAAAACAAACTGAGAGATTTAATTGAAAGTCAAAAAGATGCAGCTAACGGCAGTGTGGCCAAACTTGTTTACAACTGGTACGCCTCGTGTATGGACCAAAAGGAACGCGACAGACTTAAGGCGACACCACTATTGAATTTGCTCAATGGGACTCTGGGGATGGACTTTCATCCATTTGTCTCCAAAGAAAATTTTTCCGATGTAGACTGGGTTCTTGAAGATGTTCTGGCGACAGTTCACCGTTATCTTGGCGTATATCCTCTATTCACAGTGTCTTTGGGCGTAGATCCCATAAATTCGTCTTCTCCTACTCACCTTATGATATCCAAGTCGAAGCCTCTAATACAAGCGAACAATCTTCAAATACATAATGCTTATTTAACGGTGGAAGAGCACGCCATTAAGATTGTCAAAGCATACTTACGACTAATGGGCAATGTAGCCCTTCTCCTTGGAGGACTTGATAACCAAGATCCGTTTGCTTTGACTGATGAAATAAAGCACGTCCTTCTCTTGGAAGTGTCAATCGTCAGGATATTGCACGATGTATCGGCAAAAGAGTCAGAAAATGAAATTGCAATATGGACAGTTCAAGATTTCCAAAGAGAAGTACCAGGGTTTGACTGGGGCCGATATTTCAGCAAGCTAACAGAAGGGCTCGGTGACCAATCCTTTTCATCTTCTGAAGAAGTATTCGTAGAGTCTCCAATATTCTTTAAAAGACTGATAGAGTTGTTGAATTCTGTCAGACGTACAAGTGGCAGCACTATTGCCAACTACATCACATGGTTTATAGTTTACAACTACGCTCCTTATCTGTCAAGTGACTTTCATGAAGCGTACTTGCAGTACGCAAAGGAGGCTTATGGAATACAAAAATCCAGTCCACCCTGGCGAAGATGCGTCCGCGGTACAGACGAGTCTCTTGACATGGGTGTGTCCATGCTCTTTATCAATGGTAGTGGTTTTACCAACGAAAGTATAGTTCATGCGAATGATATGGTCCAACAGATCCGTGAAGCATTTATAGACAACTTAAAGACCGTGAACTGGATGGATAGTGCTACAAAAGAGGCAGCAAAGGAAAAGGCTGAAGCTATCTTACAACAAATAGGTTACCCGAAATTTATCGTGAACGAAACTTTGTTAATGGAATATTTCGACGGGTTGACAGTGGACCCCAAAAGGCTCTTTCAAAACCGTTTGACAGAAAAGAGTATAAGAATGAAAAACACGCTGTTATTTAGAGGAAAGCCACAAAGCCGTTTGGAATGGCAAATGCGACCAACGGAGATAAATGCGTATTATTCACCAACTGGCAATAAAATCGTTGTTCCAGCCGCTATTCTTCGACCTCCGTTTTACCATGTTGAATATCCACACGCGGAGAATTTTGGCGCTATTGGATTTGTGGTTGGACATGAACTTACACACGGATTTGACGTCACCGGTGCTATGTTTGATAAAGAAGGAAATTTGGCAAACTGGTGGAGCAAGTCATCGCTTAGCAACTTTCGAGAAAGAGAGGGGTGCTTTGTGAGACAGTACAGTGCTGACAGCGTGCTAGGACACAATTTGAATGGCAAGAAGACTCTTGGAGAAAACACTGCCGATAACGGAGGTTTAAAGTTGGCCTATAAGGCCTATAAGAAATGGCGAGCAAGGAAAGACCATGAAACAAGGCTACCTAATCTGAGAGTCACGTCGGATCAGCTATTTTTCCTTTCCTTCGCACAGATCTGGTGTGAAAAGTCAACTCCAGGTTACGCGTTGACCGACTTAGCAGTCAATGTTCATTCACCGGGAAAATTTCGGGTGGTGGAAACCCTCCGGAACAGCGTAGACTTTGCAAAAGCATTTAATTGTAAATTAGGATCACCAATGAATCCAGAGCAAAAGTGTGAAGTTTGGTGA

Transcript

chr12Alt.g26432.t1

AGCAAAGAACTGAAGTGGACGGCAGCAGAGTGTTTCGCCAGCCTCGACAGATTGAACATGAAATGGGTATTGGGCTTAATAGTGATGGCGAACCTCTTGCTCGCACATTCTCTAACAAAGATCAAAACACATCATGAGCGCAGAAATTACCACAAGAAAACAGATGATGACATTCTAGGCCAACTTGAAGATGTAATAATACGTTTACCTCAACACCATAAATCAGCGCACAAACGGATTTTTCACAAACTCCAAGACATCCCAGAATGCAAGACGGAAAAGTGCTCAGAACAGAGTTGGAATATGTCACAGATGATGGACGCATCCGCTGACCCTTGTCAAGACTTTTATCAGTACGCATGTGGGGGCTGGATTGCCGAGGGGCTCCCAGAAGATCACGCAAAGTGGACTATATTTGCCTATTTGGCTGAACAGACAGAAAACAAACTGAGAGATTTAATTGAAAGTCAAAAAGATGCAGCTAACGGCAGTGTGGCCAAACTTGTTTACAACTGGTACGCCTCGTGTATGGACCAAAAGGAACGCGACAGACTTAAGGCGACACCACTATTGAATTTGCTCAATGGGACTCTGGGGATGGACTTTCATCCATTTGTCTCCAAAGAAAATTTTTCCGATGTAGACTGGGTTCTTGAAGATGTTCTGGCGACAGTTCACCGTTATCTTGGCGTATATCCTCTATTCACAGTGTCTTTGGGCGTAGATCCCATAAATTCGTCTTCTCCTACTCACCTTATGATATCCAAGTCGAAGCCTCTAATACAAGCGAACAATCTTCAAATACATAATGCTTATTTAACGGTGGAAGAGCACGCCATTAAGATTGTCAAAGCATACTTACGACTAATGGGCAATGTAGCCCTTCTCCTTGGAGGACTTGATAACCAAGATCCGTTTGCTTTGACTGATGAAATAAAGCACGTCCTTCTCTTGGAAGTGTCAATCGTCAGGATATTGCACGATGTATCGGCAAAAGAGTCAGAAAATGAAATTGCAATATGGACAGTTCAAGATTTCCAAAGAGAAGTACCAGGGTTTGACTGGGGCCGATATTTCAGCAAGCTAACAGAAGGGCTCGGTGACCAATCCTTTTCATCTTCTGAAGAAGTATTCGTAGAGTCTCCAATATTCTTTAAAAGACTGATAGAGTTGTTGAATTCTGTCAGACGTACAAGTGGCAGCACTATTGCCAACTACATCACATGGTTTATAGTTTACAACTACGCTCCTTATCTGTCAAGTGACTTTCATGAAGCGTACTTGCAGTACGCAAAGGAGGCTTATGGAATACAAAAATCCAGTCCACCCTGGCGAAGATGCGTCCGCGGTACAGACGAGTCTCTTGACATGGGTGTGTCCATGCTCTTTATCAATGGTAGTGGTTTTACCAACGAAAGTATAGTTCATGCGAATGATATGGTCCAACAGATCCGTGAAGCATTTATAGACAACTTAAAGACCGTGAACTGGATGGATAGTGCTACAAAAGAGGCAGCAAAGGAAAAGGCTGAAGCTATCTTACAACAAATAGGTTACCCGAAATTTATCGTGAACGAAACTTTGTTAATGGAATATTTCGACGGGTTGACAGTGGACCCCAAAAGGCTCTTTCAAAACCGTTTGACAGAAAAGAGTATAAGAATGAAAAACACGCTGTTATTTAGAGGAAAGCCACAAAGCCGTTTGGAATGGCAAATGCGACCAACGGAGATAAATGCGTATTATTCACCAACTGGCAATAAAATCGTTGTTCCAGCCGCTATTCTTCGACCTCCGTTTTACCATGTTGAATATCCACACGCGGAGAATTTTGGCGCTATTGGATTTGTGGTTGGACATGAACTTACACACGGATTTGACGTCACCGGTGCTATGTTTGATAAAGAAGGAAATTTGGCAAACTGGTGGAGCAAGTCATCGCTTAGCAACTTTCGAGAAAGAGAGGGGTGCTTTGTGAGACAGTACAGTGCTGACAGCGTGCTAGGACACAATTTGAATGGCAAGAAGACTCTTGGAGAAAACACTGCCGATAACGGAGGTTTAAAGTTGGCCTATAAGGCCTATAAGAAATGGCGAGCAAGGAAAGACCATGAAACAAGGCTACCTAATCTGAGAGTCACGTCGGATCAGCTATTTTTCCTTTCCTTCGCACAGATCTGGTGTGAAAAGTCAACTCCAGGTTACGCGTTGACCGACTTAGCAGTCAATGTTCATTCACCGGGAAAATTTCGGGTGGTGGAAACCCTCCGGAACAGCGTAGACTTTGCAAAAGCATTTAATTGTAAATTAGGATCACCAATGAATCCAGAGCAAAAGTGTGAAGTTTGGTGACAACTGCTCAACCAATTTAGAAATATTTTTTTAGAATATGAATGTGTCGGAATAAGGGTTCTACATGAAATGTAAAAAAAAGCAAAAAACAAAGAAAAACGAAACAAAAGAGCAACCAGAAAAAACACGCTTTGGTTTTAGTTTGTGTTCAGAACATTTCAACCCATCAAATCAGAAGCAAAAACATGTTTAAGGAAAACAAGAGAATCAATTATCCTGTCCGCACCTTGTTTGATGCAAAAATCCTAGTAACTGAATCATTGTACACAGTAGGAGAATATTCTATTTTTATGCATGGCCGGGTGGGACGGTCTTTTATTGCAAATATTTATTAGACAAACTGGGTCATACAATCGAATTACCGGAGGTTGAAAATGGAAATCATTTGAATTTTTAAACTTTGACAATAAATCCATCTTGTAAGAAAATGCAAAGGACATTTTATTTTTGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F1N476	Endothelin-converting enzyme 2 OS=Bos taurus OX=9913 GN=ECE2 PE=2 SV=1
P0DPD6	Endothelin-converting enzyme 2 OS=Homo sapiens OX=9606 GN=ECE2 PE=1 SV=1
B2RQR8	Endothelin-converting enzyme 2 OS=Mus musculus OX=10090 GN=Ece2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01431 all species →	Peptidase_M13	Peptidase family M13	Family	Interproscan
PF05649 all species →	Peptidase_M13_N	Peptidase family M13	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042089 all species →	Homologous_superfamily	Peptidase M13, domain 2	Interproscan
IPR018497 all species →	Domain	Peptidase M13, C-terminal domain	Interproscan
IPR000718 all species →	Family	Peptidase M13	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR008753 all species →	Domain	Peptidase M13, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11733 all species →	ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016485 all species →	Biological Process	protein processing	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g26432.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g26432.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

71.9Max TPM

46.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	46.91	71.91

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	71.91
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	70.14
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	61.76
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	61.66
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	60.27
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	57.26
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	57.14
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	56.22
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	54.95
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	53.81
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	52.29
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	50.92
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	50.78
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	50.57
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	49.23
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	47.67
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	47.06
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	45.11
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	44.60
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	43.72
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	43.21
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	43.10
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	43.05
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	43.02
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	42.99
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	42.12
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	42.06
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	41.91
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	41.40
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	40.47
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	40.21
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	39.97
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	38.52
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	38.23
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	36.30
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	34.22
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	33.72
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	28.99
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	28.86

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.