Gene detail

Detailed information of g26540.t2 in Acropora digitifera

Genomic Location: chr12Alt:22904412...22908876
NR annotation: XP_029196798.2, amiloride-sensitive amine oxidase [copper-containing]-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g26540.t2

ATGAAGGAAGAACAAGAAAAAATGGATGCAAACCAACCGATGATGGAGTCGGAATCCAGTCGCAAAGCGCTTTGCATGAATCAGCTTCTGAAATGGAAGGTGTTGGCAATCACTTTTATCATCGTTAGCGTAGCACTGCTGATTGCGTTGATAGTGGTCGCTATGACGCTTAGGAAAATCGACGAGAAACATCAGCGGAAAATTCCTGAGTCTATGGGGAATGATAATGAAGTCAAGGCTTGCTTAGAAGGTTTGTCATCGAGTCCTGGGAAAAGCCCTAGGTCCGCTGGAGTCTTTGATGACCTGACAGTGAATGAAATCATCGCTGTTAGAGATTATCTCCTGCACCAAACCGAACTTAACCTCACGAAAATCAAGGAGGCCGCTATCAACAGTAACTACATCACTTCCGTACAGCTGTTGCCACCACCAAAGGCTGAGACTCTGGCATATCTGGATGGCAAGGGTGACAAACCCGAACGGAAAGCCATTGCGGTGGTATTCCGTGGTGGAGACGACCCTCCTGTAGTGAAAGAATACCTCGTTAGCCCTGTAGCTGTACCAACGAAGTACGTGGCTAGAAAGATCCCAGGAAAATACTTGGATTATGTTCCATTTAATGCTCGACCTTATGACTTTGTCGAATATATCGTAGTTAATCAGGTTCTTGTTAACAATGCATCAACAAGGCTTTCTAAACTGATGGTAGAAAGTTATGATGGTTACTCGTTTTATCCAGGATGCACCGAAAAGTGTCTTACCATAAGAACAACAGCGCCAATGGGTTTCACTAGCGAAGCCGATCGTCATCATTGGGTCACCTTTGCGCGAAAGATGACCGGCGAATACGAACACACAGTTGATTTGTCCCTGCTGGTTGATCACGCAGGAGCTGATATCTCGAAATGGAAAATCCTTAGTGTCATCTACAATAACCAAACGTTTAACTCTGTGGATGAGCTGGTGGAGAAATACAATAACGATGCCATTGACAAGATCAAGATTCCAGCACCAACAAAGAAACCGTTGTTTTCAAGTTATGAGCGCAGAGGCGATCCTCAGCCGGCCAAGCCGATGAGAGGACCAGGGTTGTACGAGCCAGATGGCAAACGCTACACTGTCAAGGGTCGCCATGTTAGCTACATGTCGTGGTCTTTCGATTTTCGAATGGACTCTTACAGTGGAATGCAACTTTATGACATAAGGTTCAATGGAGATAGAATCATCTATGAGCTGAGCCTGCAAGAAGCAGCTGCGACATACGGAGGTTACTACCCAAACCCCTCCTGGAATAACTACCTGGACAGCAACTGGGCACTGGGGACGGCCAGCTGGGAGCTGGTCCGTGGAGTCGATTGTCCCAGCACGGCTACGTTCTTCGACCTTGTTCACATGGTCTGGGTTGGGAGGCCATTCACATTTCGCAACGCCGTTTGTGTGTTCGAGTTGAACACCGGGAAGCCGCTTCGCCGACATTACGACAGCGACTATGCGGGTGGGTATAATTTTTACGGTGGCATGGCAAACCAACTCTTGGTCTTACGCACAATAGCGACACCAGGCAACTATGATTACGTCTTTGACTTTATCTTCTACCAGAATGGTGTCGTAGAAGTTCAAACCTCTGCCTCGGGGTACGTATACGGCTCCTTCTACGATTCCAACTCGAATCCATACTCGTACAAACTTCACGAGCACTTGACTAGTGGTACACACGATCATCTTTTTAGTTACAAAGTTGATTTGGACGTCGGCGGAAGAAAAAACTCGTACGAGACGATTGAGATAGGAGTCGAGAACATCACCGAACGCTGGTTCCCCAACAGAACCCGAATTCAAAAGGTGCTGAAACGCAGTGTTAAAAGCGCAGAGCTGGATGCTACTTACAAGTTTAACTTTGACACACCAAAGTATCTGAACTTCTTCAGTGATGTAAAGAACAGCATGGGCGTGAAGAAAGGTTATCGCATACAGTTGGAGGGCATTTTGAAGCAGTTGTATCCCGAGGACTGGATGATCACACCCATGATGAGTTGGTCTCTTTATCAAATGGCTGTCACTAAGTTCAAGGAAAACGAGACACAGAGCAGCTGCATCTACAACATGAATGGTCCAACCGATCCACAGTTAGACTTTCGGCAGTATCTCCTCGATAACGACTCTATAATTAACGAAGATCTGGTTGCCTGGGTAACGATTGGTATGATGCATGTACCTCATTCCGAAGACATACCGAACACAGCCACTGCTGCAAACGTAGTCAGCTTCTTCATCAGGCCCTTTAACTACTTTGATGAGGATCCTTCCATGGGGTCAACGAACGCCATCTTGATCACGCCCACAGACCCATCGTCTAGTGGTCAGAACGTCCAGCGGTATGGTACTCGTGATGGCCCTCAGTGTATGCCCAAGAAACGTGATCTAGACTTTAATGGAACGTACATTCATGGATAG

Transcript

chr12Alt.g26540.t2

ATTCAATGAGAGCATAATATTTTGATTCCATTGTTGAAGATTGTTTTGTACACAAATTGCACGCAAATTCGTGACGTCATCTGAAGACATTATTGCCCGTGCTTTCGAGGAGCGACGGTTTCGAAGCCTGCAGGACAGTTGTAGAAGATTCTTGCACTAAAACTGTTTTCATTCTGCGAACGAGAATGAAGGAAGAACAAGAAAAAATGGATGCAAACCAACCGATGATGGAGTCGGAATCCAGTCGCAAAGCGCTTTGCATGAATCAGCTTCTGAAATGGAAGGTGTTGGCAATCACTTTTATCATCGTTAGCGTAGCACTGCTGATTGCGTTGATAGTGGTCGCTATGACGCTTAGGAAAATCGACGAGAAACATCAGCGGAAAATTCCTGAGTCTATGGGGAATGATAATGAAGTCAAGGCTTGCTTAGAAGGTTTGTCATCGAGTCCTGGGAAAAGCCCTAGGTCCGCTGGAGTCTTTGATGACCTGACAGTGAATGAAATCATCGCTGTTAGAGATTATCTCCTGCACCAAACCGAACTTAACCTCACGAAAATCAAGGAGGCCGCTATCAACAGTAACTACATCACTTCCGTACAGCTGTTGCCACCACCAAAGGCTGAGACTCTGGCATATCTGGATGGCAAGGGTGACAAACCCGAACGGAAAGCCATTGCGGTGGTATTCCGTGGTGGAGACGACCCTCCTGTAGTGAAAGAATACCTCGTTAGCCCTGTAGCTGTACCAACGAAGTACGTGGCTAGAAAGATCCCAGGAAAATACTTGGATTATGTTCCATTTAATGCTCGACCTTATGACTTTGTCGAATATATCGTAGTTAATCAGGTTCTTGTTAACAATGCATCAACAAGGCTTTCTAAACTGATGGTAGAAAGTTATGATGGTTACTCGTTTTATCCAGGATGCACCGAAAAGTGTCTTACCATAAGAACAACAGCGCCAATGGGTTTCACTAGCGAAGCCGATCGTCATCATTGGGTCACCTTTGCGCGAAAGATGACCGGCGAATACGAACACACAGTTGATTTGTCCCTGCTGGTTGATCACGCAGGAGCTGATATCTCGAAATGGAAAATCCTTAGTGTCATCTACAATAACCAAACGTTTAACTCTGTGGATGAGCTGGTGGAGAAATACAATAACGATGCCATTGACAAGATCAAGATTCCAGCACCAACAAAGAAACCGTTGTTTTCAAGTTATGAGCGCAGAGGCGATCCTCAGCCGGCCAAGCCGATGAGAGGACCAGGGTTGTACGAGCCAGATGGCAAACGCTACACTGTCAAGGGTCGCCATGTTAGCTACATGTCGTGGTCTTTCGATTTTCGAATGGACTCTTACAGTGGAATGCAACTTTATGACATAAGGTTCAATGGAGATAGAATCATCTATGAGCTGAGCCTGCAAGAAGCAGCTGCGACATACGGAGGTTACTACCCAAACCCCTCCTGGAATAACTACCTGGACAGCAACTGGGCACTGGGGACGGCCAGCTGGGAGCTGGTCCGTGGAGTCGATTGTCCCAGCACGGCTACGTTCTTCGACCTTGTTCACATGGTCTGGGTTGGGAGGCCATTCACATTTCGCAACGCCGTTTGTGTGTTCGAGTTGAACACCGGGAAGCCGCTTCGCCGACATTACGACAGCGACTATGCGGGTGGGTATAATTTTTACGGTGGCATGGCAAACCAACTCTTGGTCTTACGCACAATAGCGACACCAGGCAACTATGATTACGTCTTTGACTTTATCTTCTACCAGAATGGTGTCGTAGAAGTTCAAACCTCTGCCTCGGGGTACGTATACGGCTCCTTCTACGATTCCAACTCGAATCCATACTCGTACAAACTTCACGAGCACTTGACTAGTGGTACACACGATCATCTTTTTAGTTACAAAGTTGATTTGGACGTCGGCGGAAGAAAAAACTCGTACGAGACGATTGAGATAGGAGTCGAGAACATCACCGAACGCTGGTTCCCCAACAGAACCCGAATTCAAAAGGTGCTGAAACGCAGTGTTAAAAGCGCAGAGCTGGATGCTACTTACAAGTTTAACTTTGACACACCAAAGTATCTGAACTTCTTCAGTGATGTAAAGAACAGCATGGGCGTGAAGAAAGGTTATCGCATACAGTTGGAGGGCATTTTGAAGCAGTTGTATCCCGAGGACTGGATGATCACACCCATGATGAGTTGGTCTCTTTATCAAATGGCTGTCACTAAGTTCAAGGAAAACGAGACACAGAGCAGCTGCATCTACAACATGAATGGTCCAACCGATCCACAGTTAGACTTTCGGCAGTATCTCCTCGATAACGACTCTATAATTAACGAAGATCTGGTTGCCTGGGTAACGATTGGTATGATGCATGTACCTCATTCCGAAGACATACCGAACACAGCCACTGCTGCAAACGTAGTCAGCTTCTTCATCAGGCCCTTTAACTACTTTGATGAGGATCCTTCCATGGGGTCAACGAACGCCATCTTGATCACGCCCACAGACCCATCGTCTAGTGGTCAGAACGTCCAGCGGTATGGTACTCGTGATGGCCCTCAGTGTATGCCCAAGAAACGTGATCTAGACTTTAATGGAACGTACATTCATGGATAGGTGTTGTCCAAATGTGAATGAACATAAGTTTCCCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P36633	Diamine oxidase [copper-containing] OS=Rattus norvegicus OX=10116 GN=Aoc1 PE=2 SV=1
Q8JZQ5	Diamine oxidase [copper-containing] OS=Mus musculus OX=10090 GN=Aoc1 PE=2 SV=1
Q9TRC7	Diamine oxidase [copper-containing] OS=Sus scrofa OX=9823 GN=AOC1 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01179 all species →	Cu_amine_oxid	Copper amine oxidase, enzyme domain	Domain	Interproscan
PF02728 all species →	Cu_amine_oxidN3	Copper amine oxidase, N3 domain	Domain	Interproscan
PF02727 all species →	Cu_amine_oxidN2	Copper amine oxidase, N2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016182 all species →	Homologous_superfamily	Copper amine oxidase, N-terminal	Interproscan
IPR015798 all species →	Domain	Copper amine oxidase, catalytic domain	Interproscan
IPR049947 all species →	Conserved_site	Copper amine oxidase, copper-binding site	Interproscan
IPR015802 all species →	Domain	Copper amine oxidase, N3-terminal	Interproscan
IPR036460 all species →	Homologous_superfamily	Copper amine oxidase, catalytic domain superfamily	Interproscan
IPR000269 all species →	Family	Copper amine oxidase	Interproscan
IPR049948 all species →	Conserved_site	Copper amine oxidase, TPQ-binding site	Interproscan
IPR015800 all species →	Domain	Copper amine oxidase, N2-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10638 all species →	COPPER AMINE OXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005507 all species →	Molecular Function	copper ion binding	Interproscan
GO:0008131 all species →	Molecular Function	primary methylamine oxidase activity	Interproscan
GO:0009308 all species →	Biological Process	amine metabolic process	Interproscan
GO:0048038 all species →	Molecular Function	quinone binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11182	AOC1, ABP1; diamine oxidase	EC:1.4.3.22	Tryptophan metabolism	ko00380	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g26540.t2 across 39 RNA-seq samples of Acropora digitifera. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.