Gene detail

Detailed information of g26726.t1.1 in Blastomussa wellsi

Genomic Location: :...
NR annotation: XP_020611669.1, uncharacterized protein LOC110050126 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

g26726.t1

ATGGCAGACGAATCAGGGAAATTGCAAGAATTTAAAAGCCACGGCAATTTCTCTGGAGAAGAAGGACAAATGCAAAAGACGTCTTGCAGTTCTGGTGATGTAAAATATTGCCTTGCTATGATTGCCGAAACGTATTCAAGTTCTGATGATGAAGCAAGTCCAGAAAATTCTACAGAACCAGGTGATAATGATATTAGCCTGGCTGAAGATGACAGCTGCAAAGATTTGGGCATCAATAACTTGGTAAATATAAGTGTTAATCCAGTTTCTGTTGCTGAAAAAGGTGCATCCCAGTTCGAAGAACAAAACAATAAGTTAAACAGCAACTGGACTGGCACTAATCCCGAGCATCGAAAGGGGACTGAAACGGATGGGCACACACTCATAGAGCCAGAAAGTGGTGGACACACATGTATGAATACTGAGAATGATGGATACTCACTCATAGAACCTAAGATTGATGGATATCTACTTAAAGAGCCAGGGAGTGATACACAGATACTCACAAAACCTAAGTGTGATGGACACACATTTATTGAAACTTACAGGGATGGACACATAGCTGGCGACATTGAGAGTGATGTACACGCACCCAAAGAGCCAGCAAAGGATGGATACTTTGCCATAAATAGAGAAAGTGATGACTGCACACATAAAATTATAGAGTCAGGAAGTGGAGACACACTCATAGAAACAGGGAGTGATCAAAGCCCCCTTATCGAGTGTAAGACAGACAGAGATTTTATGGAGACTGGCAGTGATGAGAACACAAAGATTGAGATTGCTGGACATATTCTTATGGAGCCAGGAATTGATCAAAGCACAAGTATAGAGTCTAAGAGTGACAGAAACACACTGATGGAGACTGGGAGTGATGGACACACACTCATGAATACAGATAGTGATGGGAATGTAGTCTTAAATAGTGCGAGTGATGAAAACATGCTCACAGAGCCAGCAAATGATAGATGCATGGTCCATATAGAGTCTGTATGTGATGGAAACACGCAGACCGGCAATGATGGACACATGCTTATAAAGAATGGGATTGGTGAATGCGCACTCATAAATACTGAAAGTAATGAACATATACGCTCAGGGCCAGAGAGTAATGGGCACAGACTCACTAAGGCAGAAAACAATGGTCATGCACTTACAGAGCCTAAAAGTGAGGAAGGATCACTCATAGGGTCACAGAGACATGAACACACACTTGCATGCTCTGATATAGATCATCCAGTGTACATGATGAGTAGTATTGATAAGGAATTGGAGAGCATTGGTGAGATTGAAGTTACTGGCACGTCTCAGACTGGAAGACTTACAGAGTGTGCAACTGAAGCTAGCGGCTCCTCTTCAAGCGATAGTTCTTCAGATGAAGAGAGCTCATCCAGTGAAAGTGAAAGTTCTGAATCAAGTTCTGAGGATGATCTGGAAAACATCAGAAAGCAGCTTGAAAGAGAGGAAGAGCGTGTTCATACAGGCCCATTGAAAACAAAAAGTGAACTATCAGTGAAGGATCTTCCTGAAATTCCAGACCTTGATGTAACCATTGATGAAAATGTTCAGCTTGTGGAGCTTGGTGTTGTATTCAGTATTGTCGAGTCATTAGTGGTAGTTAAAGCTCTGCCGCAGACTCCAGCTCTGGATTCTGAAAGTGTTCTTTTCTTGGAGAACAGATCCTGTCTTGGCTTGGTGTTTGAGATATTTGGACCTGTACAGACTCCATTTTATTCTGTAAGATTTAACAGAGACACAGACatcagtaataaaaatgttcacAAAGGAGACAAAGTATTCTATGTTCCAGACATGATGGAGTATTCCAACTTTGTGTTTGTTTCGCAGCTTAAAAAGTTAAAAGGATCTGATGCTTCATGGGAACATGATGAAGAACCTCCACAAGAGgCCATTGAATATtctgatgatgaagaagaagcTAAAGCTAGGGCGAGTAGGAAGAAAGAAAGAATGGCTAGAAAAGGCTCAAGTGCAGATGATGGTGGTGAAGCCAGTAAAAGGGACCAGAGTGGAGCCAATGATCATCAGGGACCTAGCAGAGGTAGTAGGAAAAGAACTTGGCGAACTCGTGGGAGAGGACTGTCAGACAATCAGAACCAGAATCAAGGGACCCACAGCACTACAACATCATCACCGCAACACCCAGCCTTCAGAGGCCCTGGGAGTGCCTTACCTCCCCAGGTCCCAGCTCATATGGTACACAGGCCTGTATTTCCACCACAGGGACCCTTTATAAGTCACCCAACCCAAGAAGCAGCACCCTTTGAGATGAGACATATGGGGCCTCCAAGAGGAATACCTTTGAGAGTTCCAATGCGCATGATGCCACCACCTATGGGACCTTTTCCTGGACCACATCCTGACCCTATGGGAAATGCACCCATTCCTTCATTTGCAACCTCTAGGCCCTTTATTGGTGCCCATCATTTGCAGGGACACTGGGCAATGGGACCACCATCTGGATTTGCTCCAAGATACTCCATGCCACGCAATCAAGGTTTTCAAAATCCTGGTTTTCAATCAAGAGATCTACACCTTGGTATTCCCCCACCCCTGGCACCTCCTCCTCCCCCATCCCCTCCATctaatttttaa

Transcript

g26726.t1

Protein

Uniprot

Uniprot term	Description
Q52KK4	H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Rattus norvegicus OX=10116 GN=Naf1 PE=1 SV=1
Q96HR8	H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Homo sapiens OX=9606 GN=NAF1 PE=1 SV=2
Q9VJ62	H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Drosophila melanogaster OX=7227 GN=CG10341 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04410	Gar1	Gar1/Naf1 RNA binding region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR007504	Family	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1	Interproscan
IPR040309	Family	H/ACA ribonucleoprotein complex non-core subunit Naf1	Interproscan
IPR038664	Homologous_superfamily	H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31633	H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001522	Biological Process	pseudouridine synthesis	Interproscan
GO:0042254	Biological Process	ribosome biogenesis	Interproscan
GO:0000493	Biological Process	box H/ACA snoRNP assembly	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005732	Cellular Component	sno(s)RNA-containing ribonucleoprotein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14763	NAF1; H/ACA ribonucleoprotein complex non-core subunit NAF1	-	Ribosome biogenesis	ko03009	deepkoala