Gene detail

Detailed information of g26740.t1 in Acropora digitifera

Genomic Location: chr12Alt:25563613...25564749
NR annotation: XP_015759224.1, PREDICTED: msx2-interacting protein-like isoform X2 [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q62504	Msx2-interacting protein OS=Mus musculus OX=10090 GN=Spen PE=1 SV=2
Q96T58	Msx2-interacting protein OS=Homo sapiens OX=9606 GN=SPEN PE=1 SV=1
Q9P6M8	mRNA export factor crp79 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=crp79 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034172 all species →	Domain	SHARP, RNA recognition motif 1	Interproscan
IPR050502 all species →	Family	Eukaryotic RNA-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48025 all species →	OS02G0815200 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g26740.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.