Gene detail

Detailed information of g26755.t2 in Acropora digitifera

Genomic Location: chr12Alt:25720807...25725779
NR annotation: XP_015759216.1, PREDICTED: dynamin-related protein DNM1-like isoform X1 [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr12Alt.g26755.t2

AACCGGCTGATTGGTCGTTATCTACTTCCCATGCGACGTAATGAAACAGCCAATACGCTTCAAGCGCGCACCACGTATCCCATAATACTCAATCTCCGAAATGGTCCGAAGACAAAAGTAGAGGTGAGATGTGAAAGCATCCCAGATATCGGAGGAACAGTAGAAGATCCCAAAGACGATTTAGTGGAGCAGTTTCTCAATAAAGTTTCGGATCGCCTTCCCAAAGAACCAGGAACGCCGATATCCAAGACCCCAGTTAATGTGACTTTACATGGCCCTAGTCTTACGACCTTAACATTGGTGGACCTTCCCGGGGCGCACTTCGCCAATGATGACCAACGAATGAATCACGTCACACAACAACTGGTGCTGGAGTACATTAAAAAGAACACAAAGAGCATTATTGTGATCGTGTCCGAAGTAGGGGACCCCACTGGCGACAGCGCAATCAACCTTGTCATGACGCAGGCCCAGGATTTCAGGACACGCACCATCTGCGTTTTAACCAAGCCGGACAAATTGAGGATGGAAGATGACATGGGAAAGAAAGTAGCCTTGAATCAATCAAGCTTCACCCTGGAAGACGGTCGTTTTATTGTTCTCAGAGGCAAAGATGGTACGGACTCCACTGAGAAGGACTGGGACGCAGAAATGACTCAGATAAAAGAAAAAGAGTGGTTCGCGAGACATCCTCACTACAAAGACATTCAACACCTGTGTGGAATAGAACGGCTGATGGAGTCCATGATCTCCTTATTGGCAAACAAAATGATCGATGAGATTCCGAGATTAGTAAGAGAGATGAAGGAGAGAAAGATAAAGGTAGAAAAGGAACTTGAGAGTCTTTCCATGAGCGAAGTGCCCGAGTCAAACGAGAAGAAAGGAGCACTGGTGATGAAAATCAAACACAATCTGATCTCTAAGCTGAGAGTGCTGCTGTTTAACAACACGTCCGACAGTAAAGGAGGGGAGCAAGTCAGGGATTTATTCAAAGAATTCCATGATAGCGTTTTTAAGGTAAATCCTCTGTATCTTCGAAGTGATTCCGAGATAAAAAATAAGCAAAAGAAGATCGAAGGAGTTGCAGCTCCTCTTGGAGACAGCAGCGAAAACAGTCAGTTGCTACGGAAACTCTTGTACGAGAAATATCAAGGGATGGCAACGCTTTCTCATAGTGGAAAAGCATCAAGACATCCCTTCACAGTAGAGGCCCCAGTGGATCAATTATTGCCTATATCTGAAGCCCTCGTGAAGAAAGTTGAGGAAACTTTACGTGGCATAGTAAAAGACGCCATCAATGAAAGCTTGTCAAAGTTTCCAACGCTCAAGCAAGCAGTAGAAGCTAAAGTGGTGAACAAAATATTTGACACCAAACGCGATCAGACGATCGAGTTTATCAAGCAGTTTCTTCAGATGCAGAAGATGAGCACTGATATTGTGTTTGCTCCAGTTCCCCTTCCAAACGAGTTAGGTGTATGGGATGCCACGCTTGTGACCAATTCAAACAGGGAAAGAGTTAGCCATCCCAGCATGATTTCGAAAACCATGAACCACATGAAACACCTCTCCTCAAAGCTGTATCCGCATGACGTCATTACAGGTATCGAAAGCACAGGAGCCATCGGTAACTACAAGGAAATAGAGGAAATGAAGAGGATAAAAACGAATGTGGTGCGTTGCTTTAACGTGATAAAGATGAATGTGTGTGATACTGTGCCGCGATGTATACTTCATTTCTTTATCACCGAACTTGTGGAGGGCCTTAGTTCCGCCTTAGAAGAGGAAGACTTGGTCGAGTTCTTACAAGAGAAACAGGAAATACGTGACAAGAGGAGGTTGTATCGGGACCAACAGCAGGCTCTTGAACATGCTTTGCCCAAGACCGACGAGGTGCTGAAGAAACTCTTGCGCATGCGTCAGGGACCATCCAAGGGCAAGAAGCTTGAGTTTTAGAGACGAATTCTGGTAACCATGGCTTCATAATGAGTCGACGGAGATTGCCATAGCGGAATTTTCTGGAATCCATTTCTCTCTGAAATAATTTTATTGCGGAGAATCCAAATAATAGCGTAGAGACAGAAGAGTAAACCAATGACCAGTGCATTGTTAACAATTGCAAACTATGAATATTATTGATTAAAGTAGAAACTTGATA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02212 all species →	GED	Dynamin GTPase effector domain	Family	Interproscan
PF00350 all species →	Dynamin_N	Dynamin family	Domain	Interproscan
PF01031 all species →	Dynamin_M	Dynamin central region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003130 all species →	Domain	Dynamin GTPase effector	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR022812 all species →	Family	Dynamin	Interproscan
IPR045063 all species →	Domain	Dynamin, N-terminal	Interproscan
IPR020850 all species →	Domain	GTPase effector domain	Interproscan
IPR000375 all species →	Domain	Dynamin stalk domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11566 all species →	DYNAMIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005874 all species →	Cellular Component	microtubule	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g26755.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.