Gene detail

Detailed information of g2687.t2 in Acropora digitifera

Genomic Location: chr2Alt:3275290...3284051
NR annotation: XP_044175218.1, tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like isoform X1 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr2Alt.g2687.t2

CCGTGTATAGTTTACGAAATACTGGGTACGATCCAAGATGGCTGCGTGCTGACAATGGAAATACACGCGTAATGTCAAAGTTGAAAATTTTATCCAGCTGCAAGTATATCGCATCGCCATTCTCTAATTTGGAAGATCTCTCCTGGAGGCTTCTTTTGAGGAAGTTGGGTGTTCATTTATGCTTTAATACTAGTTTGATTAAAGCGAACTTCGAAGGTCTAGATAATGTAAGCAGTTTGTTTGGAAATCAGGAAGATCGGCCTCTGATTGTTCAGGTGAGTTCAGAGGACCCTGATAGTGTCATAGTAACTGTGAATGAACTTCAAGACTTGTGTGATGCTGTTGACATCAATCAATGTAACAGTTCCTGTGATGACAAAAATGATGCATGGAATGCTTGGATCACCTGCATCAAGAAAGTTCAGAGGGACTGTGAAATACCCATCTTCTGCAAGCTTCCTTTCAGCCGGCAAACAGTTGATGAAACAGTAAGGAAGGGAAAATTACTCCAAGAAGCTGGATGTAAGTTTCTTCTCCTGCACAAACAAAGAAAGGAGAAATTGAATGCTATTGTCACCAATAAGGACTGGGATGCAGTTAAAGTCATCTGTGAATCCATTTCTCTGCCATTTATTCTTGATGTGGGGACATCGTCCTTGTGGGAAATTGATAAATGCATACAGCACACTGGAGTCCAAGGGGTGGCTGTTTCAGACTCACTAGAGACCAACCCTGCCCTGTTTAGCAAGAAACAGCCAACAATATTGGAGGTGGTAGACAATTATTTGGAGCTGTGTGAAATGTATCACACACCCTTGTTGAATGTCAAACAGCACCTCCAAGGATTTTGTTATTTCTATTTGTGTAGGTTCCATGGTATCAGTACAAAACTAGAAGAGGTTAAAAACATCGAGGAGATTAAAATGCTGATTGACGAATTGAAGAGAGAAATGGCAATGCTTTCTAAAAGGGAAATGAAGTCATTAGTGAGATTAAAAAGAAAGAAGGAAACTTTCAAACGGAAGCATCTGGAAAAGACAGAAGAAAAGAAATTTACAAAGGAGCTACACGCTCTAAAATGTAATGACGTCAATCACGTTCCTAAAATAATTCGGAAGAAAATCCAGAAGGAAAGAGTTGAGAATGCAATGAAGAATGGTGCTCAAAGAGTCGCAATCGACTTTACTTTGTCCGAAGACATGAACAACAAGGAAGTGTCCAAACTTGCAGCACAGGTGCGACAGCTGTATGGTTCTAACATGAAGTCGGTGTCTCCTGTAGATCTTCACCTGACGGGGCTGGACACGAATGGCCGAGTGTACCGAGAATGCGTCCGACAATCTCTCAACTTTGACAAGCTGATGGTCCACAAGTCGGAGACGAGTTACTGTAGATTGTTCGACCCCGAAGAGATTGTCTACCTGACGCCGGATTCACCGCAAGTTCTTGAGACCCTTGACAAAGACAAGGTGTACATCATAGGCGGGCTTGTTGATCACCACGTGTTGAAGGATCGAACGAAAACGCGAGCCGAAACAAAAAGTGTATTAACCGCACGGCTTCCCATTGACGTGTACATGGAGAGGAAGAGCGAACCTGGAAACCACTCGTTTTCAAAGGTGCTCACAGTTAACCAAGTATTTGACATTTTGTTGAAGTTCCACGAGACCCAAGATTGGCGATGTGCTCTGGAATCGTCTATTCCTTCTCGTAAAGGATTGGTGTTAAAACAGCCTTAACATTGACCGGTGAAAGTTGTTGCACAAGGAATCGATTGTGTTGCGGGAATAATAGTGATCAAGGGAAAGAGATCGATCCAATTTTTCATCATCCAACTTAATACCACCAAGAAACGGTAACACAAATGCATTTCGACCATATTGTGTACGGAAGAGTCGCTGAAGAAATGACCGATACAACTTGACTGCGATTGAAAAAAATGGAAACTATAGGATTAAGTTTGAAAAAGCCGTGCAATCTCTAAGCTACTGGTAATAAATTGATATAATTTCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q08BM0	tRNA methyltransferase 10 homolog B OS=Danio rerio OX=7955 GN=trmt10b PE=2 SV=1
Q08DP1	tRNA methyltransferase 10 homolog B OS=Bos taurus OX=9913 GN=TRMT10B PE=2 SV=1
Q6PF06	tRNA methyltransferase 10 homolog B OS=Homo sapiens OX=9606 GN=TRMT10B PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01207 all species →	Dus	Dihydrouridine synthase (Dus)	Family	Interproscan
PF01746 all species →	tRNA_m1G_MT	tRNA (Guanine-1)-methyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035587 all species →	Domain	DUS-like, FMN-binding domain	Interproscan
IPR038459 all species →	Homologous_superfamily	tRNA methyltransferase TRM10-type domain superfamily	Interproscan
IPR016009 all species →	Domain	tRNA methyltransferase TRMD/TRM10-type domain	Interproscan
IPR028564 all species →	Domain	tRNA methyltransferase TRM10-type domain	Interproscan
IPR007356 all species →	Family	tRNA (guanine-N1-)-methyltransferase, eukaryotic	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13563 all species →	TRNA (GUANINE-9-) METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan
GO:0002939 all species →	Biological Process	tRNA N1-guanine methylation	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0009019 all species →	Molecular Function	obsolete tRNA (guanine-N1-)-methyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g2687.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g2687.t2 across 39 RNA-seq samples of Acropora digitifera. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.