Gene detail

Detailed information of g26883.t2.1 in Blastomussa wellsi

Genomic Location: :...
NR annotation: CAH3165282.1, unnamed protein product, partial [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

g26883.t2

ATGAAGTTGAAGTTTCCCATCAGACGGAGTAAGATGTCGTCAGTGCGCCAACACCCTTTGCACCTccttgttgttttcttgtttgtctgcGTATTTGTTCCAGCTAATGAAGCATTCAGTTTGAAGGCCGGGAAAGACAACGTGACCACTGCCACACTAGGCTTGTTTGCTTGCAAGGTGATATACTTCCAAAGTCCTTTCTATGGAGGCCAACAAATCAAAGTTCTCGCTTCGATTAGTCATACCACAAAGAGCCCATCACCTCGGAACGGCGCTTCAGTTTGGGTTGAGGATGTTACAGCAAGCGAGTTCACCGTTTGTGTTCTTGAGTTTGGAGATGGGTCGAACAATACCGCTGAGGTGAACTGGATTGCTTTTCAATCTGCGCCGTATGGATCCCAGATAGGTACAACCTCATTGAACACTTGGACAACTGGAACGGAATGCAAGCGAGTAGATTTCAAACAGCGCTTTTCAAAGCCTCCAGCCATATTTGTCTCTGCTAGTCACCACTTGCCTAAGAGACCTCAGGATGCAATGGTTTTGTGGGTTGAGGATTCGCGCCAAGGCAGTTTCAAGATTTGTCTCCGAGAAGCCAAGATTTTCGATGGACCTCATAAGAACATTAAAATAACAATAAACTTCACCGAGTCATTTTATGTTCCTCCTGTTGTGATAGTGACACCAAAGCAGaatgacaacaataacaatTCTAATCTCTCCGCGTCACGTTGTAATGCTGTTACTGCTTGGGTTGAGCATGCGTCTACAACTGATGCACAGGTTTGTGTGAAAAATTACAACAGCGACTCCAACAATAAAGATATCATCACAGTCGACTACATGATCACTGGAGGTTTTCCTTTACGACGAGGGCGCCGCCACATGCCCCATATTCCATCACTGGGATATTCCCACTGTGAAGTAATTCGCCTCAAACCTTACGTGTTCTATCCCGACAAACCACTTGAAGTTCAGATCACTGTCAATCATATTGATACCAGTGACAAGTCCTATGTCCACGATGCCGTCGTATCGTGGGTTGAAAATATCAGTTACAATCGCTTTACTGCGTGTGTGATGGCGGCAGGCTATAACGAGCGTAAGTCACATGCTAACGTGACGGTTGATTGGATGGCGTACCAAGGAGCTCCGGTGGGCGGTGTTGCTGGAGAAGTACGAATATCACAATGGTGGACTGGAACGACTTGTACAGCTGTCAATTTTCCGTTGGGAAAGTTTTCAGTGATACCTTCAGTATTTGTCACTGCTGCACACCATCATGCTGGACTTAAGCGTGACGCtgccagtgtgtggaatgaagaCGTCACGCAGTCGTCATTCAAAGTTTGTTTGAGGGAGCTGCAGAACTACGCTGGATCCCATGAAGATGTTTACGTTAAATGGCTGGCGTTTTCGTCTCTTCACAAGCCCCTCTTCTCAGAACATAACTCAGTCTATTTTGCAAACTCCCAGCACCCTCCTCCAGATTACAACAATGCCTACTGTAAAGATGTCCGTTTCATCAAGCACTACAACAGCACTCCAAACGTGTTTGTTTCGGCAAACCATTCATCAAGTGGTGGCAATAAACAACCAGAACACAATGGAATAACTGCCTGGGTGGAATACATAAACAAGACCGGTTTCCGGCTTTGCTTGAAGGAATTGTACGACACGAAGTATGATCCGCTGTCTCTATCATACACTGTCTTGTCAGATATATGCCGACCTGGTTGGAATTACTTTGGTGGTAATTGCTATTTCACAAGCCCCGCATGCGCCTCATGGCTGACCGCTGAGTCAAACTGTTTAACAATGAGCTCTGATCTGGTGACTGTACACAATCAGCAAGAGAATGTTTATATACAGCATCAACACAATGGTGAAAGATCATGGCTGGGGTTAAATGACCGCAGTGTGGAGGGTTCATTTGTGTGGACAAACAAAGAAATTAGCGCTTTTAGGTTCTGGGCTCCAAAGCAACCAAATGACTGGAACAATGAAGACTGTGTGCACACCCTTGGTGCGAAACATGGATACGCTTGGAATGACGTGCCGTGCAATAACTGTTTCAACTATACCTGTTTTACAGGTAAGGAATGTGCCATTTACAGTTAA

Transcript

g26883.t2

Protein

Uniprot

Uniprot term	Description
Q28343	Aggrecan core protein OS=Canis lupus familiaris OX=9615 GN=ACAN PE=2 SV=2
Q61361	Brevican core protein OS=Mus musculus OX=10090 GN=Bcan PE=1 SV=2
P13608	Aggrecan core protein OS=Bos taurus OX=9913 GN=ACAN PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00059	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF09458	H_lectin	H-type lectin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR001304	Domain	C-type lectin-like	Interproscan
IPR037221	Homologous_superfamily	H-type lectin domain superfamily	Interproscan
IPR018378	Conserved_site	C-type lectin, conserved site	Interproscan
IPR019019	Domain	H-type lectin domain	Interproscan
IPR051004	Family	Dendritic cell-specific ICAM-grabbing non-integrin domain-containing protein	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22802	C-TYPE LECTIN SUPERFAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0007155	Biological Process	cell adhesion	Interproscan
GO:0030246	Molecular Function	carbohydrate binding	Interproscan
GO:0009897	Cellular Component	external side of plasma membrane	Interproscan
GO:0044419	Biological Process	biological process involved in interspecies interaction between organisms	Interproscan