Detailed information of g27.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MCG8693558.1, polyprenyl synthetase family protein [Minwuiales bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P44916Octaprenyl diphosphate synthase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=ispB PE=1 SV=1
P0AD57Octaprenyl diphosphate synthase OS=Escherichia coli (strain K12) OX=83333 GN=ispB PE=1 SV=1
P0AD58Octaprenyl diphosphate synthase OS=Shigella flexneri OX=623 GN=ispB PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08698Fcf2Fcf2 pre-rRNA processingFamilyInterproscan
PF12254DNA_pol_alpha_NDNA polymerase alpha subunit p180 N terminalFamilyInterproscan
PF00348polyprenyl_syntPolyprenyl synthetaseDomainInterproscan
PF01400AstacinAstacin (Peptidase family M12A)DomainInterproscan
PF01549ShKShK domain-likeDomainInterproscan
PF02205WH2WH2 motifFamilyInterproscan
PF00431CUBCUB domainDomainInterproscan
PF00057Ldl_recept_aLow-density lipoprotein receptor domain class ARepeatInterproscan
PF00089TrypsinTrypsinDomainInterproscan
PF07645EGF_CACalcium-binding EGF domainDomainInterproscan
PF14670FXa_inhibitionCoagulation Factor Xa inhibitory siteDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR014810DomainFcf2 pre-rRNA processing, C-terminalInterproscan
IPR039883FamilyFcf2/DNTTIP2Interproscan
IPR024647DomainDNA polymerase alpha catalytic subunit, N-terminal domainInterproscan
IPR000092FamilyPolyprenyl synthetaseInterproscan
IPR033749Conserved_sitePolyprenyl synthetase, conserved siteInterproscan
IPR008949Homologous_superfamilyIsoprenoid synthase domain superfamilyInterproscan
IPR024079Homologous_superfamilyMetallopeptidase, catalytic domain superfamilyInterproscan
IPR001506DomainPeptidase M12AInterproscan
IPR003582DomainShKT domainInterproscan
IPR034035DomainAstacin-like metallopeptidase domainInterproscan
IPR006026DomainPeptidase, metallopeptidaseInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR003124DomainWH2 domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR000152PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR023415Conserved_siteLow-density lipoprotein (LDL) receptor class A, conserved siteInterproscan
IPR000859DomainCUB domainInterproscan
IPR002172RepeatLow-density lipoprotein (LDL) receptor class A repeatInterproscan
IPR001254DomainSerine proteases, trypsin domainInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR036055Homologous_superfamilyLDL receptor-like superfamilyInterproscan
IPR009030Homologous_superfamilyGrowth factor receptor cysteine-rich domain superfamilyInterproscan
IPR018097Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR050751FamilyExtracellular matrix structural proteinInterproscan
IPR049883DomainNOTCH1 EGF-like calcium-binding domainInterproscan
IPR001881DomainEGF-like calcium-binding domainInterproscan
IPR035914Homologous_superfamilySpermadhesin, CUB domain superfamilyInterproscan
IPR043504Homologous_superfamilyPeptidase S1, PA clan, chymotrypsin-like foldInterproscan
IPR009003Homologous_superfamilyPeptidase S1, PA clanInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21686UNCHARACTERIZEDInterproscan
PTHR45861DNA POLYMERASE ALPHA CATALYTIC SUBUNITInterproscan
PTHR12001GERANYLGERANYL PYROPHOSPHATE SYNTHASEInterproscan
PTHR10127DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAININGInterproscan
PTHR24034EGF-LIKE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0003682Molecular Functionchromatin bindingInterproscan
GO:0003688Molecular FunctionDNA replication origin bindingInterproscan
GO:0003697Molecular Functionsingle-stranded DNA bindingInterproscan
GO:0003887Molecular FunctionDNA-directed DNA polymerase activityInterproscan
GO:0005658Cellular Componentalpha DNA polymerase:primase complexInterproscan
GO:0006272Biological Processleading strand elongationInterproscan
GO:0006273Biological Processlagging strand elongationInterproscan
GO:1902975Biological Processmitotic DNA replication initiationInterproscan
GO:0008299Biological Processisoprenoid biosynthetic processInterproscan
GO:0004659Molecular Functionprenyltransferase activityInterproscan
GO:0008237Molecular Functionmetallopeptidase activityInterproscan
GO:0004222Molecular Functionmetalloendopeptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003779Molecular Functionactin bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0004252Molecular Functionserine-type endopeptidase activityInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K02523ispB; octaprenyl-diphosphate synthaseEC:2.5.1.90
Prenyltransferasesko01006deepkoala

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