Gene detail

Detailed information of g270.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_001623065.2, ketimine reductase mu-crystallin [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q8W4A7	Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 OS=Arabidopsis thaliana OX=3702 GN=GUX3 PE=2 SV=1
Q9LSB1	UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=GUX1 PE=2 SV=1
Q8GWW4	UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=GUX2 PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02301	HORMA	HORMA domain	Domain	Interproscan
PF13359	DDE_Tnp_4	DDE superfamily endonuclease	Domain	Interproscan
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF02423	OCD_Mu_crystall	Ornithine cyclodeaminase/mu-crystallin family	Family	Interproscan
PF01225	Mur_ligase	Mur ligase family, catalytic domain	Domain	Interproscan
PF02875	Mur_ligase_C	Mur ligase family, glutamate ligase domain	Domain	Interproscan
PF08245	Mur_ligase_M	Mur ligase middle domain	Domain	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF17814	LisH_TPL	LisH-like dimerisation domain	Domain	Interproscan
PF01501	Glyco_transf_8	Glycosyl transferase family 8	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003511	Domain	HORMA domain	Interproscan
IPR051294	Family	HORMA Domain-Containing Meiotic Progression	Interproscan
IPR036570	Homologous_superfamily	HORMA domain superfamily	Interproscan
IPR027806	Domain	Harbinger transposase-derived nuclease domain	Interproscan
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003960	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR050747	Family	Mitochondrial chaperone BCS1 subfamily	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR023401	Homologous_superfamily	Ornithine cyclodeaminase, N-terminal	Interproscan
IPR003462	Family	Ornithine cyclodeaminase/mu-crystallin	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR036615	Homologous_superfamily	Mur ligase, C-terminal domain superfamily	Interproscan
IPR000713	Domain	Mur ligase, N-terminal catalytic domain	Interproscan
IPR005758	Family	UDP-N-acetylmuramate--L-alanine ligase	Interproscan
IPR050061	Family	Peptidoglycan biosynthesis MurCDEF	Interproscan
IPR036565	Homologous_superfamily	Mur-like, catalytic domain superfamily	Interproscan
IPR004101	Domain	Mur ligase, C-terminal	Interproscan
IPR013221	Domain	Mur ligase, central	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR006594	Conserved_site	LIS1 homology motif	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR045184	Family	WD40 repeat-containing protein SMU1	Interproscan
IPR006595	Domain	CTLH, C-terminal LisH motif	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR029044	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR002495	Family	Glycosyl transferase, family 8	Interproscan
IPR050587	Family	GNT1/Glycosyltransferase 8	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48225	HORMA DOMAIN-CONTAINING PROTEIN 1	Interproscan
PTHR22930	UNCHARACTERIZED	Interproscan
PTHR23070	BCS1 AAA-TYPE ATPASE	Interproscan
PTHR13812	KETIMINE REDUCTASE MU-CRYSTALLIN	Interproscan
PTHR43445	UDP-N-ACETYLMURAMATE--L-ALANINE LIGASE-RELATED	Interproscan
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR22848	WD40 REPEAT PROTEIN	Interproscan
PTHR11183	GLYCOGENIN SUBFAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005743	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0032979	Biological Process	protein insertion into mitochondrial inner membrane from matrix	Interproscan
GO:0034551	Biological Process	mitochondrial respiratory chain complex III assembly	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0042562	Molecular Function	hormone binding	Interproscan
GO:0009058	Biological Process	biosynthetic process	Interproscan
GO:0016881	Molecular Function	acid-amino acid ligase activity	Interproscan
GO:0008763	Molecular Function	UDP-N-acetylmuramate-L-alanine ligase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0008380	Biological Process	RNA splicing	Interproscan
GO:0071011	Cellular Component	precatalytic spliceosome	Interproscan
GO:0016757	Molecular Function	glycosyltransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13111	SMU1; WD40 repeat-containing protein SMU1	-	Glycosyltransferases	ko01003	deepkoala
			Peptidoglycan biosynthesis and degradation proteins	ko01011	deepkoala
			Spliceosome	ko03041	deepkoala