Detailed information of g27057.t1 in Acropora digitifera

Genomic Location: chr13Alt:532143...536287
NR annotation: XP_015753785.1, PREDICTED: probable splicing factor 3B subunit 5 [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q56K13Splicing factor 3B subunit 5 OS=Bos taurus OX=9913 GN=SF3B5 PE=3 SV=1
Q9BWJ5Splicing factor 3B subunit 5 OS=Homo sapiens OX=9606 GN=SF3B5 PE=1 SV=1
Q9VHI4Splicing factor 3B subunit 5 OS=Drosophila melanogaster OX=7227 GN=Sf3b5 PE=1 SV=1
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07189
all species →		SF3b10Splicing factor 3B subunit 10 (SF3b10)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009846
all species →		FamilySplicing factor 3B subunit 5/RDS3 complex subunit 10Interproscan
IPR017089
all species →		FamilySplicing factor 3B, subunit 5Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR20978
all species →		SPLICING FACTOR 3B SUBUNIT 5Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000398
all species →		Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0005686
all species →		Cellular ComponentU2 snRNPInterproscan
GO:0071011
all species →		Cellular Componentprecatalytic spliceosomeInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K12832SF3B5, SF3B10; splicing factor 3B subunit 5-Spliceosomeko03041deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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