Gene detail

Detailed information of g27057.t1 in Montipora capitata

Genomic Location: xfSc0000003:137938...142657
NR annotation: XP_029212291.2, alkylated DNA repair protein alkB homolog 8-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q80Y20	tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8 OS=Mus musculus OX=10090 GN=Alkbh8 PE=1 SV=1
Q95K79	tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8 OS=Macaca fascicularis OX=9541 GN=ALKBH8 PE=2 SV=1
Q07G10	tRNA (carboxymethyluridine(34)-5-O)-methyltransferase alkbh8 OS=Xenopus tropicalis OX=8364 GN=alkbh8 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF13532	2OG-FeII_Oxy_2	2OG-Fe(II) oxygenase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR032857	Family	Alpha-ketoglutarate-dependent dioxygenase alkB homologue 4	Interproscan
IPR034256	Domain	ALKBH8, RNA recognition motif	Interproscan
IPR037151	Homologous_superfamily	Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily	Interproscan
IPR005123	Domain	Oxoglutarate/iron-dependent dioxygenase	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR027450	Domain	Alpha-ketoglutarate-dependent dioxygenase AlkB-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12463	OXYGENASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0032451	Molecular Function	demethylase activity	Interproscan
GO:0070988	Biological Process	demethylation	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan