Detailed information of g2707.t2 in Acropora digitifera

Genomic Location: chr2Alt:3495570...3504973
NR annotation: XP_044174831.1, LOW QUALITY PROTEIN: uncharacterized protein LOC114950507 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13637
all species →
Ank_4Ankyrin repeats (many copies)RepeatInterproscan
PF12796
all species →
Ank_2Ankyrin repeats (3 copies)RepeatInterproscan
PF15112
all species →
DUF4559Domain of unknown function (DUF4559)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036770
all species →
Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR002110
all species →
RepeatAnkyrin repeatInterproscan
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR051165
all species →
FamilyMultifunctional Ankyrin Repeat Domain-Containing ProteinInterproscan
IPR027897
all species →
FamilyProtein of unknown function DUF4559Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24123
all species →
ANKYRIN REPEAT-CONTAININGInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K21440ANKRD50; ankyrin repeat domain-containing protein 50-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g2707.t2 across 39 RNA-seq samples of Acropora digitifera. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples
0TPM > 0
1Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
Coral branch 39 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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