Genomic Location: chr2Alt:3495570...3504973
NR annotation: XP_044174831.1, LOW QUALITY PROTEIN: uncharacterized protein LOC114950507 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families
| CDS |
| g2707.t2 |
| Transcript |
| chr2Alt.g2707.t2 |
| Protein |
| chr2Alt.g2707.t2 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13637 all species → | Ank_4 | Ankyrin repeats (many copies) | Repeat | Interproscan |
| PF12796 all species → | Ank_2 | Ankyrin repeats (3 copies) | Repeat | Interproscan |
| PF15112 all species → | DUF4559 | Domain of unknown function (DUF4559) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036770 all species → | Homologous_superfamily | Ankyrin repeat-containing domain superfamily | Interproscan |
| IPR002110 all species → | Repeat | Ankyrin repeat | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR051165 all species → | Family | Multifunctional Ankyrin Repeat Domain-Containing Protein | Interproscan |
| IPR027897 all species → | Family | Protein of unknown function DUF4559 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24123 all species → | ANKYRIN REPEAT-CONTAINING | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K21440 | ANKRD50; ankyrin repeat domain-containing protein 50 | - | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of g2707.t2 across 39 RNA-seq samples of Acropora digitifera. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| Coral branch | 39 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM,
StringTie quantification over 39 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.