Gene detail

Detailed information of g27070.t1 in Montipora capitata

Genomic Location: xfSc0000003:329623...344816
NR annotation: XP_044176434.1, uncharacterized protein LOC114955339 isoform X2 [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g27070.t1

atgctgcgcgagcttcagtatcgagaaagaaggcgtagtggagatcatttttcccctgtaacccatgataaggaaatgaccctgtttaacccttctccttcagatgatttggttccaacaataggggagattccagatttttcaatggacatgacttttctggaaacacctgtggttgaagttccttcacttggatttcccaacctggaagaaccatgtcagtccccttttgactctgatgtatcagacagctgtccagcatcaccctctccagtgtcctctccttccccacacagctcctcatcatcttcagagtctggtattgaagatggaagtgatatggaagaagcaaatacttcttttaccgaagtacctgttgatagtgtaatagtgaaaagggaagatccaccttcacctttggattctttgaaccaagcctgtgagaatggaaatggaagtaaaagaaggcgtaggagctgcaggaaaacgtcccgtgtcagcagtgtcttggaagaacttaacaagctactagttgagaccagcatgtctgcaacatcaacttccattgatcaatgtataactcttccattgcaatcacagcctatcgcgaccaccagcctcgacctgatggctggtattcaaacaactgtgacagcatcagcttctcttagctgcccagtgtctgtccaagctagtaatcaaactaacgccttggttgaaagcattcccatttctgcatcgaaccaacttgtagcaaccgaccctcctgccaaaatgagtacatctcctccagtggcttctcagtcgaaaacaaggagtaagcaaacaaagaatgcaagcaagcttgatgaaccaaaacttgtaatcatcgaagaaccagaagagaattatagagctagatatgaaagtgaaggttgtcgaggtcctatccatggatcacaagagaatacttttccaactgtgaaggtcactggctataatgatgccatttggatcactgttcacttgactaccagtggtggtgttgcgcattatcattccattcatggacctggttcaaccaaggtgccttgtaaagagactactcttgagggaggagtgccagctgttcaagtaatggttggaccagattcaagcatgactgctgtacttgattccttgagcattcgcagactgcgaaattgggaaggcgatagggaattgagaaaacggggaatcgatccaaggacttggaagaaggaacggaaggaagcaaggttgttgtttcaagctgaaatccctgaacaaaatggtcgccctgcaacaaagctgatatgcaaatctaaagtcttccagtgcagctcatcgggtcctcctgggaatccagagatctggtgggccagcataagcgagggttctgctgaaggcggtgatgaactgggtcttattggaaaaaaatttcaatccggtttcaaagttcgatttttctcggccaagacatcagacaacgttcaccagccttctctcgcacagatcgaaacttgggagagctttgctgaggttgacaagagtaagtcacatcagggtgcagcagtggtcctcactcctgcatattgtgacactcaaatctcctctcccgtcactgtcaatgtggaggttatgtttggaaatggcagagatgcaaaatctagtgaacctattgaattcacttacaaacctaacccaaagttggaagtcgaagaagttgaaatgctttccagtctgcctgtttcaactgaacgattcctgccattggaaatttttaactccgttggtgatattgtcatgaatggttcaccttgtcagcaagtactgcaacctccagcacctgaaccagctccagtaccaaccccagcgccagctgctttgccagttgctttaccaccagtgaatgatgagcaagactggcaatccttgtgtgttttgcttggcgagctgcatcagaaaggagacctgtcttcacaacatgtaaaggatttgtgcaactacatcaagagaagggatactttactgcttcaagcttttcgttcttcacgaactgctagcaccacagaacaacttcaagcaaactttaaacagtatctgtcaggaatgctttgtaatttgtag

Transcript

g27070.t1

ATGCTGCGCGAGCTTCAGTATCGAGAAAGAAGGCGTAGTGGAGATCATTTTTCCCCTGTAACCCATGATAAGGAAATGACCCTGTTTAACCCTTCTCCTTCAGATGATTTGGTTCCAACAATAGGGGAGATTCCAGATTTTTCAATGGACATGACTTTTCTGGAAACACCTGTGGTTGAAGTTCCTTCACTTGGATTTCCCAACCTGGAAGAACCATGTCAGTCCCCTTTTGACTCTGATGTATCAGACAGCTGTCCAGCATCACCCTCTCCAGTGTCCTCTCCTTCCCCACACAGCTCCTCATCATCTTCAGAGTCTGGTATTGAAGATGGAAGTGATATGGAAGAAGCAAATACTTCTTTTACCGAAGTACCTGTTGATAGTGTAATAGTGAAAAGGGAAGATCCACCTTCACCTTTGGATTCTTTGAACCAAGCCTGTGAGAATGGAAATGGAAGTAAAAGAAGGCGTAGGAGCTGCAGGAAAACGTCCCGTGTCAGCAGTGTCTTGGAAGAACTTAACAAGCTACTAGTTGAGACCAGCATGTCTGCAACATCAACTTCCATTGATCAATGTATAACTCTTCCATTGCAATCACAGCCTATCGCGACCACCAGCCTCGACCTGATGGCTGGTATTCAAACAACTGTGACAGCATCAGCTTCTCTTAGCTGCCCAGTGTCTGTCCAAGCTAGTAATCAAACTAACGCCTTGGTTGAAAGCATTCCCATTTCTGCATCGAACCAACTTGTAGCAACCGACCCTCCTGCCAAAATGAGTACATCTCCTCCAGTGGCTTCTCAGTCGAAAACAAGGAGTAAGCAAACAAAGAATGCAAGCAAGCTTGATGAACCAAAACTTGTAATCATCGAAGAACCAGAAGAGAATTATAGAGCTAGATATGAAAGTGAAGGTTGTCGAGGTCCTATCCATGGATCACAAGAGAATACTTTTCCAACTGTGAAGGTCACTGGCTATAATGATGCCATTTGGATCACTGTTCACTTGACTACCAGTGGTGGTGTTGCGCATTATCATTCCATTCATGGACCTGGTTCAACCAAGGTGCCTTGTAAAGAGACTACTCTTGAGGGAGGAGTGCCAGCTGTTCAAGTAATGGTTGGACCAGATTCAAGCATGACTGCTGTACTTGATTCCTTGAGCATTCGCAGACTGCGAAATTGGGAAGGCGATAGGGAATTGAGAAAACGGGGAATCGATCCAAGGACTTGGAAGAAGGAACGGAAGGAAGCAAGGTTGTTGTTTCAAGCTGAAATCCCTGAACAAAATGGTCGCCCTGCAACAAAGCTGATATGCAAATCTAAAGTCTTCCAGTGCAGCTCATcGGGTCCTCCTGGGAATCCAGAGATCTGGTGGGCCAGCATAAGCGAGGGTTCTGCTGAAGGCGGTGATGAACTGGGTCTTATTGGAAAAAAATTTCAATCCGGTTTCAAAGTTCGATTTTTCTCGGCCAAGACATCAGACAACGTTCACCAGCCTTCTCTCGCACAGATCGAAACTTGGGAGAGCTTTGCTGAGGTTGACAAGAGTAAGTCACATCAGGGTGCAGCAGTGGTCCTCACTCCTGCATATTGTGACACTCAAATCTCCTCTCCCGTCACTGTCAATGTGGAGGTTATGTTTGGAAATGGCAGAGATGCAAAATCTAGTGAACCTATTGAATTCACTTACAAACCTAACCCAAAGTTGGAAGTCGAAGAAGTTGAAATGCTTTCCAGTCTGCCTGTTTCAACTGAACGATTCCTGCCATTGGAAATTTTTAACTCCGTTGGTGATATTGTCATGAATGGTTCACCTTGTCAGCAAGTACTGCAACCTCCAGCACCTGAACCAGCTCCAGTACCAACCCCAGCGCCAGCTGCTTTGCCAGTTGCTTTACCACCAGTGAATGATGAGCAAGACTGGCAATCCTTGTGTGTTTTGCTTGGCGAGCTGCATCAGAAAGGAGACCTGTCTTCACAACATGTAAAGGATTTGTGCAACTACATCAAGAGAAGGGATACTTTACTGCTTCAAGCTTTTCGTTCTTCACGAACTGCTAGCACCACAGAACAACTTCAAGCAAACTTTAAACAGTATCTGTCAGGAATGCTTTGTAATTTGTAG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001943 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00554 all species →	RHD_DNA_bind	Rel homology DNA-binding domain	Domain	Interproscan
PF16179 all species →	RHD_dimer	Rel homology dimerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011539 all species →	Domain	Rel homology domain, DNA-binding domain	Interproscan
IPR008366 all species →	Family	Nuclear factor of activated T cells (NFAT)	Interproscan
IPR008967 all species →	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR032397 all species →	Domain	Rel homology dimerisation domain	Interproscan
IPR002909 all species →	Domain	IPT domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR037059 all species →	Homologous_superfamily	Rel homology domain (RHD), DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12533 all species →	NFAT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008134 all species →	Molecular Function	transcription factor binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g27070.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.