Gene detail

Detailed information of g27097.t1 in Montipora capitata

Genomic Location: xfSc0000004:294955...316115
NR annotation: XP_044168922.1, zinc finger FYVE domain-containing protein 16-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g27097.t1

atggcaagtccatttgttccagtggatttagacaagctgttggatgaatttgaggagacggaagaagaaacaaagccagaacaactagtcttacctggtgcaggaaatattgcaagtagaaagcagctggcaaagcagagctttcaagtatcatttcctagtatcgaggaagaggttttttctgaccaaagatctgatggacatcgtttagatgacagaactagcagtgatagtgacagtgatagcataagtggagtgataaaagaggcagaagcaatcactaatcagggggattgttttcaggcacaaagtacaccaggtgtcattgacaacatttcaggcaaactaaaagaaaatgttacagtggacgacacagacttcaaaccgacttcaaatgataatagtttgtggagcacaattgagggaagtaattctgaggatgttgccgtgaatgaaggaaataatgcaaagaaagtagcacatgcacagtggctagaagaggaatcggctgaaacgtcaaatagcattgtggctggtggcttatccgatgttgatttcaacaattttgcatccaagaaggtggcctactttgcggaaactagctgtccaaatgatgtgacggcatcaagtttagaggaatcatgcagtgggagtggtgtgactggtactgcaagtcacacagatggagaaagacacaagtctagtgaggagaaaattgggccagtggaatctacttttgatgctggccagttgcatgattccgggttacaagtagtagattcagatgtcagaactagtgatcctgaaatatctaatgacgtggtgggaggtgtcaattttgcagcactcagttgtgatagtcaaagaggaagtgtagattttatgaagaatgtgcctagtttgctggaaaaccaggcaatttttgatcccagaatcagcgatggtggtcatcaagactctgggatatcagatatctcagaggcagtccattcaagtgatttgtctcttgaagtagcttctgatacaacaaacgcatggcctatggtccttgtcagtgacaattcactttctcaggtgcatgaagctggttcttcaaatcttgaaagttatgtgcaaccatcagtgtcatcacaggaccaggcggattctgcccttaacgaagctggttcatggatatctaagattccagaagatgttgatgatactctgcatcacatggaggccaatgatgccagcgatagcgaaacacaggtctctagagaccaccaagttgacatgagatatgatttgtctccaagtgctcctgactatggtgaacccgcttcagagttcaatcacatagacacagaagcaattgatggaaatgaaggatccataccacttccaaatgaatcagattatgaacagtcaccttctcggtcacaagaaccaggcttgaccattgcaatggattctcaaggctccctagcagctagacgcatcacctcaggtgaagcaaacctcggaaaggtgccaccaatttgggtgccagattcagtagcaacccattgtatgaactgtggtgtgaagttcagtgttataaagagaaggcatcattgcagagcctgtggaaaggctctgtgctcgtcatgctgtaacatgaagtttatgttaccatacatggacaacagagagggcagagtttgtcaagtatgttgcaatgccttgctaagagcggaagcattgatgcatgttactgaaactcaatccattgaaaacctcacagcagggtatgacaatccaacagaagacttgacgctggaccatgatgtagaggaggacgaattggtacctgttgacccagaggaggaaataacagaagctgctgaagctgttggagatgacagctcagtggcttttgcaacagcagctgtcgatcagacttcagaggatactgttccaggtcttccgctgctacagctcccagttcttccttctccagatgtgcttggtacaccattatcaacacctacatcgcctgctctgtcagatgacagtgactgtctttttcgattagatgttgataatgtgcgttctttgttgccgcaagacacaactgctctgccccctgttttaagggttgtgaatgaagaggtgtctatacatgagaggcctgatccagctgaaataatgtatctgctaaaaggtctccatgaaacagttatatttttgctgaataaaaacttggttgtcaaagttagcattgtgaaattgagctgttgtgtaaaacgaaaatgttggtgttttgtttcggaaggaatgggggctgccaatcaagaagaaatggtggtccttctggagtgtctgcataaagagaccatgatacccaaggatgtcctctcacactttaatacagcttttgcttatgccagacaaggtcacactgtgtctgaacttggttatactatatttggccaaccatttcttggcagtagcgacaatgcaggctttctttatatcaaaccaacgtaccagtgcctgaagaatctccctctccctttgacaccttatgtggtgggactcctaattaaacgccaagagactccatgggcccagctctttcctctgagacttcaactaagacttggagctgagtacagatattatccctgtccgctttttagctcaagaaacagatctccggtgtatggagaagttggccacaccataatgaacctcctcgcggacttcaagaatttccagtatactttggtcagagtaacaggccttgtaattcatatggaagaaaaaaagacgctcgtgagattaccacaggacagatatgatgaggttgtgaagatcctcaatgcaactgatgaacatgtgatggcgcttggagccaacttcagcctcgtggccgattctcacttagtctgcatgcaggttgaacaggggtacaaaacccaggcaattaatatacagaatcaacccaggaaagtgaccggagcgagcttcattgtattcagtggtgccctgaaaacaagcagcccattcatggccaaagtcaatattgtggaagatggtattatggttcaactgatgccggaagtgatcggcaagctacggaattccctgaaagaaatgaaggactacaccattacaacaggagtccctggcggcggagccgaggaggaagtcatcattgaatgggtcagtcgacaggatgctccacgccaggacagcttttacagcccaatcgatggcctagaactgcatggtttttcaagtgtcaaagttcacactggttgtgactttactcgcaaatctgcatttaggatccagtggacggagatgttctttttgggcgaaggtcaacaaagtgcatcgcgggatatcaacaagcttacagctgagctggccaaggcgttttgtcgaaccctgatgccgcacttgtcaagactaagttctgagaatttcacagatattggcttacgggtcaacgtggacactgaaaatgttggttataacacaggtagcaatcaacagagtcttcccagcaatatcatgtctgaacttgatgatttgctaataccaatcattcacaatgcggcgtctcatcacagacggcgtgctctgaatgtggaactactgtttaaagtcttgagactcctctga

Transcript

g27097.t1

ATGGCAAGTCCATTTGTTCCAGTGGATTTAGACAAGCTGTTGGATGAATTTGAGGAGACGGAAGAAGaaaCAAAGCCAGAACAACTAGTCTTACCTGGTGCAGGAAATATTGCAAGTAGAAAGCAGCTGGCAAAGCAGAGCTTTCAAGTATCATTTCCTAGTATCGAGGAAGAGGTTTTTTCTGACCAAAGATCTGATGGACATCGTTTAGATGACAGAACTAGCAGTGATAGTGACAGTGATAGCATAAGTGGAGTGATAAAAGAGGCAGAAGCAATCACTAATCAGGGGGATTGTTTTCAGGCACAAAGTACACCAGGTGTCATTGACAACATTTCAGGCAAACTAAAAGAAAATGTTACAGTGGACGACACAGACTTCAAACCGACTTCAAATGATAATAGTTTGTGGAGCACAATTGAGGGAAGTAATTCTGAGGATGTTGCCGTGAATGAAGGAAATAATGCAAAGAAAGTAGCACATGCACAGTGGCTAGAAGAGGAATCGGCTGAAACGTCAAATAGCATTGTGGCTGGTGGCTTATCCGATGTTgatttcaacaattttgcatCCAAGAAGGTGGCCTACTTTGCGGAAACTAGCTGTCCAAATGATGTGACGGCATCAAGTTTAGAGGAATCATGCAGTGGGAGTGGTGTGACTGGTACTGCAAGTCACACAGATGGAGAAAGACACAAGTCTAGTGAGGAGAAAATTGGGCCAGTGGAATCTACTTTTGATGCTGGCCAGTTGCATGATTCCGGGTTACAAGTAGTAGATTCAGATGTCAGAACTAGTGATCCTGAAATATCTAATGACGTGGTGGGAGGTGTCAATTTTGCAGCACTCAGTTGTGATAGTCAAAGAGGAAGTGTAGATTTTATGAAGAATGTGCCTAGTTTGCTGGAAAACCAGGCAATTTTTGATCCCAGAATCAGCGATGGTGGTCATCAAGACTCTGGGATATCAGATATCTCAGAGGCAGTCCATTCAAGTGATTTGTCTCTTGAAGTAGCTTCTGATACAACAAACGCATGGCCTATGGTCCTTGTCAGTGACAATTCACTTTCTCAGGTGCATGAAGCTGGTTCTTCAAATCTTGAAAGTTATGTGCAACCATCAGTGTCATCACAGGACCAGGCGGATTCTGCCCTTAACGAAGCTGGTTCATGGATATCTAAGATTCCAGAAGATGTTGATGATACTCTGCATCACATGGAGGCCAATGATGCCAGCGATAGCGAAACACAGGTCTCTAGAGACCACCAAGTTGACATGAGATATGATTTGTCTCCAAGTGCTCCTGACTATGGTGAACCCGCTTCAGAGTTCAATCACATAGACACAGAAGCAATTGATGGAAATGAAGGATCCATACCACTTCCAAATGAATCAGATTATGAACAGTCACCTTCTCGGTCACAAGAACCAGGCTTGACCATTGCAATGGATTCTCAAGGCTCCCTAGCAGCTAGACGCATCACCTCAGGTGAAGCAAACCTCGGAAAGGTGCCACCAATTTGGGTGCCAGATTCAGTAGCAACCCATTGTATGAACTGTGGTGTGAAGTTCAGTGTTATAAAGAGAAGGCATCATTGCAGAGCCTGTGGAAAGGCTCTGTGCTCGTCATGCTGTAACATGAAGTTTATGTTACCATACATGGACAACAGAGAGGGCAGAGTTTGTCAAGTATGTTGCAATGCCTTGCTAAGAGCGGAAGCATTGATGCATGTTACTGAAACTCAATCCATTGAAAACCTCACAGCAGGGTATGACAATCCAACAGAAGACTTGACGCTGGACCATGATGTAGAGGAGGACGAATTGGTACCTGTTGACCCAGAGGAGGAAATAACAGAAGCTGCTGAAGCTGTTGGAGATGACAGCTCAGTGGCTTTTGCAACAGCAGCTGTCGATCAGACTTCAGAGGATACTGTTCCAGGTCTTCCGCTGCTACAGCTCCCAGTTCTTCCTTCTCCAGATGTGCTTGGTACACCATTATCAACACCTACATCGCCTGCTCTGTCAGATGACAGTGACTGTCTTTTTCGATTAGATGTTGATAATGTGCGTTCTTTGTTGCCGCAAGACACAACTGCTCTGCCCCCTGTTTTAAGGGTTGTGAATGAAGAGGTGTCTATACATGAGAGGCCTGATCCAGCTGAAATAATGTATCTGCTAAAAGGTCTCCATGAAACAGTTATATTTTTGCTGAATAAAAACTTGGTTGTCAAAGTTAGCATTGTGAAATTGAGCTGTTGTGTAAAAcgaaaatgttggtgttttgtTTCGGAAGGAATGGGGGCTGCCAATCAAGAAGAAATGGTGGTCCTTCTGGAGTGTCTGCATAAAGAGACCATGATACCCAAGGATGTCCTCTCACACTTTAATACAGCTTTTGCTTATGCCAGACAAGGTCACACTGTGTCTGAACTTGGTTATACTATATTTGGCCAACCATTTCTTGGCAGTAGCGACAATGCAGGCTTTCTTTATATCAAACCAACGTACCagTGCCTGAAGAATCTCCCTCTCCCTTTGACACCTTATGTGGTGGGACTCCTAATTAAACGCCAAGAGACTCCATGGGCCCAGCTCTTTCCTCTGAGACTTCAACTAAGACTTGGAGCTGAGTACAGATATTATCCCTGTCCGCTTTTTAGCTCAAGAAACAGATCTCCGGTGTATGGAGAAGTTGGCCACACCATAATGAACCTCCTCGCGGACTTCAAGAATTTCCAGTATACTTTGGTCAGAGTAACAGGCCTTGTAATtcatatggaagaaaaaaagacGCTCGTGAGATTACCACAGGACAGATATGATGAGGTTGTGAAGATCCTCAATGCAACTGATGAACATGTGATGGCGCTTGGAGCCAACTTCAGCCTCGTGGCCGATTCTCACTTAGTCTGCATGCAGGTTGAACAGGGGTACAAAACCCAGGCAATTAATATACAGAATCAACCCAGGAAAGTGACCGGAGCGAGCTTCATTGTATTCAGTGGTGCCCTGAAAACAAGCAGCCCATTCATGGCCAAAGTCAATATTGTGGAAGATGGTATTATGGTTCAACTGATGCCGGAAGTGATCGGCAAGCTACGGAATTCCCTGAAAGAAATGAAGGACTACACCATTACAACAGGAGTCCCTGGCGGCGGAGCCGAGGAGGAAGTCATCATTGAATGGGTCAGTCGACAGGATGCTCCACGCCAGGACAGCTTTTACAGCCCAATCGATGGCCTAGAACTGCATGGTTTTTCAAGTGTCAAAGTTCACACTGGTTGTGACTTTACTCGCAAATCTGCATTTAGGATCCAGTGGACGGAGATGTTCTTTTTGGGCGAAGGTCAACAAAGTGCATCGCGGGATATCAACAAGCTTACAGCTGAGCTGGCCAAGGCGTTTTGTCGAACCCTGATGCCGCACTTGTCAAGACTAAGTTCTGAGAATTTCACAGATATTGGCTTACGGGTCAACGTGGACACTGAAAATGTTGGTTATAACACAGGTAGCAATCAACAGAGTCTTCCCAGCAATATCATGTCTGAACTTGATGATTTGCTAATACCAATCATTCACAATGCGGCGTCTCATCACAGACGGCGTGCTCTGAATGTGGAACTACTGTTTAAAGTCTTGAGACTCCTCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O95405	Zinc finger FYVE domain-containing protein 9 OS=Homo sapiens OX=9606 GN=ZFYVE9 PE=1 SV=2
Q7Z3T8	Zinc finger FYVE domain-containing protein 16 OS=Homo sapiens OX=9606 GN=ZFYVE16 PE=1 SV=3
Q80U44	Zinc finger FYVE domain-containing protein 16 OS=Mus musculus OX=10090 GN=Zfyve16 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004643 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11979 all species →	SARA_C	Smad anchor for receptor activation-like, C-terminal	Domain	Interproscan
PF01363 all species →	FYVE	FYVE zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022557 all species →	Domain	Smad anchor for receptor activation-like, C-terminal	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR006058 all species →	Binding_site	2Fe-2S ferredoxin, iron-sulphur binding site	Interproscan
IPR017455 all species →	Domain	Zinc finger, FYVE-related	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR000306 all species →	Domain	FYVE zinc finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46319 all species →	ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016197 all species →	Biological Process	endosomal transport	Interproscan
GO:0031901 all species →	Cellular Component	early endosome membrane	Interproscan
GO:0051537 all species →	Molecular Function	2 iron, 2 sulfur cluster binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04679	MADHIP, SARA; MAD, mothers against decapentaplegic interacting protein	-	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g27097.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

16.1Max TPM

6.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	6.11	15.17
whole organisms · low pH treatment	15	15	5.42	10.76
whole organisms · extra low pH treatment pH treatment	12	12	6.47	16.13

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	15.17
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	14.76
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	12.79
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	12.45
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	7.89
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	7.13
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	6.26
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	5.55
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	5.34
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	5.08
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	4.87
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	4.77
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	4.41
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	4.13
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	3.94
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	3.87
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	3.65
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	3.15
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	1.35
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	1.01
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	0.72
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	10.76
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	10.35
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	9.25
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	7.78
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	6.69
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	6.56
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	5.73
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	4.71
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	4.60
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	4.05
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	3.78
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	2.79
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	1.90
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	1.63
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	0.77
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	16.13
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	12.76
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	12.19
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	6.30
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	5.99
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	5.81
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	5.14
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	4.83
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	3.29
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	2.62
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	1.43
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	1.18

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.