Gene detail

Detailed information of g271.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_022789849.1, probable RNA methyltransferase Y17G7B.18 [Stylophora pistillata]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7L2J0	7SK snRNA methylphosphate capping enzyme OS=Homo sapiens OX=9606 GN=MEPCE PE=1 SV=1
A3KQ55	7SK snRNA methylphosphate capping enzyme OS=Danio rerio OX=7955 GN=mepce PE=3 SV=2
Q8K3A9	7SK snRNA methylphosphate capping enzyme OS=Mus musculus OX=10090 GN=Mepce PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000038 (this species only)
Orthogroup (gene family)	OG0000573 (this species only)
Orthogroup (gene family)	OG0001433 (this species only)
Orthogroup (gene family)	OG0001984 (this species only)
Orthogroup (gene family)	OG0003095 (this species only)
Orthogroup (gene family)	OG0005900 (this species only)
Orthogroup (gene family)	OG0006613 (this species only)
Orthogroup (gene family)	OG0007574 (this species only)
Orthogroup (gene family)	OG0008362 (this species only)
Orthogroup (gene family)	OG0012408 (this species only)
Orthogroup (gene family)	OG0018256 (this species only)
Orthogroup (gene family)	OG0041277 (this species only)
Orthogroup (gene family)	OG0080318 (this species only)
Orthogroup (gene family)	OG0080676 (this species only)
Orthogroup (gene family)	OG0171979 (this species only)
Transcription factor family	zf-C2H2 · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03221 all species →	HTH_Tnp_Tc5	Tc5 transposase DNA-binding domain	Domain	Interproscan
PF03357 all species →	Snf7	Snf7	Family	Interproscan
PF00098 all species →	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF14223 all species →	Retrotran_gag_2	gag-polypeptide of LTR copia-type	Family	Interproscan
PF02037 all species →	SAP	SAP domain	Domain	Interproscan
PF00644 all species →	PARP	Poly(ADP-ribose) polymerase catalytic domain	Family	Interproscan
PF05406 all species →	WGR	WGR domain	Domain	Interproscan
PF02877 all species →	PARP_reg	Poly(ADP-ribose) polymerase, regulatory domain	Domain	Interproscan
PF17862 all species →	AAA_lid_3	AAA+ lid domain	Domain	Interproscan
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF21236 all species →	PRS7_OB	26S proteasome regulatory subunit 7, OB domain	Domain	Interproscan
PF01820 all species →	Dala_Dala_lig_N	D-ala D-ala ligase N-terminus	Family	Interproscan
PF07478 all species →	Dala_Dala_lig_C	D-ala D-ala ligase C-terminus	Family	Interproscan
PF12874 all species →	zf-met	Zinc-finger of C2H2 type	Domain	Interproscan
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF06859 all species →	Bin3	Bicoid-interacting protein 3 (Bin3)	Family	Interproscan
PF04389 all species →	Peptidase_M28	Peptidase family M28	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR006600 all species →	Domain	HTH CenpB-type DNA-binding domain	Interproscan
IPR039788 all species →	Family	Nucleolar protein 4 family	Interproscan
IPR005024 all species →	Family	Snf7 family	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR050800 all species →	Family	ADP-ribosyltransferase diphtheria toxin-like	Interproscan
IPR036616 all species →	Homologous_superfamily	Poly(ADP-ribose) polymerase, regulatory domain superfamily	Interproscan
IPR003034 all species →	Domain	SAP domain	Interproscan
IPR036930 all species →	Homologous_superfamily	WGR domain superfamily	Interproscan
IPR012317 all species →	Domain	Poly(ADP-ribose) polymerase, catalytic domain	Interproscan
IPR008893 all species →	Domain	WGR domain	Interproscan
IPR004102 all species →	Domain	Poly(ADP-ribose) polymerase, regulatory domain	Interproscan
IPR036361 all species →	Homologous_superfamily	SAP domain superfamily	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR041569 all species →	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003960 all species →	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR050221 all species →	Family	26S Proteasome Regulatory ATPase	Interproscan
IPR048723 all species →	Domain	26S proteasome regulatory subunit 7-like, OB domain	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR005905 all species →	Family	D-alanine--D-alanine ligase	Interproscan
IPR011127 all species →	Domain	D-alanine--D-alanine ligase, N-terminal domain	Interproscan
IPR016185 all species →	Homologous_superfamily	Pre-ATP-grasp domain superfamily	Interproscan
IPR011761 all species →	Domain	ATP-grasp fold	Interproscan
IPR013815 all species →	Homologous_superfamily	ATP-grasp fold, subdomain 1	Interproscan
IPR011095 all species →	Domain	D-alanine--D-alanine ligase, C-terminal	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR042972 all species →	Family	Insulinoma-associated protein 1/2	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR010675 all species →	Domain	RNA methyltransferase bin3, C-terminal	Interproscan
IPR039772 all species →	Family	RNA methyltransferase Bin3-like	Interproscan
IPR024160 all species →	Domain	Bin3-type S-adenosyl-L-methionine binding domain	Interproscan
IPR007484 all species →	Domain	Peptidase M28	Interproscan
IPR016574 all species →	Family	Nicalin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12449 all species →	DEATH DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR10476 all species →	CHARGED MULTIVESICULAR BODY PROTEIN	Interproscan
PTHR35317 all species →	OS04G0629600 PROTEIN	Interproscan
PTHR10459 all species →	DNA LIGASE	Interproscan
PTHR23073 all species →	26S PROTEASOME REGULATORY SUBUNIT	Interproscan
PTHR23132 all species →	D-ALANINE--D-ALANINE LIGASE	Interproscan
PTHR47501 all species →	TRANSPOSASE-RELATED	Interproscan
PTHR15065 all species →	INSULINOMA-ASSOCIATED 1	Interproscan
PTHR12315 all species →	BICOID-INTERACTING PROTEIN RELATED	Interproscan
PTHR31826 all species →	NICALIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007034 all species →	Biological Process	vacuolar transport	Interproscan
GO:0000815 all species →	Cellular Component	ESCRT III complex	Interproscan
GO:0005771 all species →	Cellular Component	multivesicular body	Interproscan
GO:0015031 all species →	Biological Process	protein transport	Interproscan
GO:0032509 all species →	Biological Process	endosome transport via multivesicular body sorting pathway	Interproscan
GO:0045324 all species →	Biological Process	late endosome to vacuole transport	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003950 all species →	Molecular Function	NAD+-protein poly-ADP-ribosyltransferase activity	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0035861 all species →	Cellular Component	site of double-strand break	Interproscan
GO:0070212 all species →	Biological Process	protein poly-ADP-ribosylation	Interproscan
GO:1990404 all species →	Molecular Function	NAD+-protein ADP-ribosyltransferase activity	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0008540 all species →	Cellular Component	proteasome regulatory particle, base subcomplex	Interproscan
GO:0036402 all species →	Molecular Function	proteasome-activating activity	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008716 all species →	Molecular Function	D-alanine-D-alanine ligase activity	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0009252 all species →	Biological Process	peptidoglycan biosynthetic process	Interproscan
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0001227 all species →	Molecular Function	DNA-binding transcription repressor activity, RNA polymerase II-specific	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0010564 all species →	Biological Process	regulation of cell cycle process	Interproscan
GO:0017053 all species →	Cellular Component	transcription repressor complex	Interproscan
GO:0030182 all species →	Biological Process	neuron differentiation	Interproscan
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0008171 all species →	Molecular Function	O-methyltransferase activity	Interproscan
GO:0008173 all species →	Molecular Function	RNA methyltransferase activity	Interproscan
GO:0017069 all species →	Molecular Function	snRNA binding	Interproscan
GO:0040031 all species →	Biological Process	snRNA modification	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0009966 all species →	Biological Process	regulation of signal transduction	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01921	ddl; D-alanine-D-alanine ligase	EC:6.3.2.4	Peptidoglycan biosynthesis and degradation proteins	ko01011	deepkoala
K03061	PSMC2, RPT1; 26S proteasome regulatory subunit T1	-	Proteasome	ko03051	deepkoala
K10798	PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4	EC:2.4.2.30	DNA repair and recombination proteins	ko03400	deepkoala
K15190	MEPCE, BCDIN3; 7SK snRNA methylphosphate capping enzyme	EC:2.1.1.-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.