Detailed information of g27178.t1 in Montipora capitata

Genomic Location: xfSc0000008:260702...278486
NR annotation: XP_029195678.2, splicing factor 1-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q15637Splicing factor 1 OS=Homo sapiens OX=9606 GN=SF1 PE=1 SV=4
Q64213Splicing factor 1 OS=Mus musculus OX=10090 GN=Sf1 PE=1 SV=6
Q8NIW7Branchpoint-bridging protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=bbp-1 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005959 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00013
all species →		KH_1KH domainDomainInterproscan
PF16275
all species →		SF1-HHSplicing factor 1 helix-hairpin domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR004087
all species →		DomainK Homology domainInterproscan
IPR047086
all species →		Homologous_superfamilySplicing factor 1, helix-hairpin domain superfamilyInterproscan
IPR004088
all species →		DomainK Homology domain, type 1Interproscan
IPR045071
all species →		FamilyKH domain-containing BBP-likeInterproscan
IPR036612
all species →		Homologous_superfamilyK Homology domain, type 1 superfamilyInterproscan
IPR032570
all species →		DomainSplicing factor 1, helix-hairpin domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11208
all species →		RNA-BINDING PROTEIN RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0003729
all species →		Molecular FunctionmRNA bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0048024
all species →		Biological Processregulation of mRNA splicing, via spliceosomeInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for g27178.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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