Gene detail

Detailed information of g27232.t1 in Montipora capitata

Genomic Location: xfSc0000012:84503...95623
NR annotation: CAH3018864.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

g27232.t1

atgcctttacgttatacctttgattggtttttcaaatctcagtctatattttctctttcgtttttcgttgacaaagaggacgacgcgaacgaggaagctcccgatgttgatgggtccgggccagattacacaatgattggaactgctattgatcttgccattccaggaaacctcttgcttgcaggaggaggcgaagagcaggcccacgattgtagtagacttgaaatgagcttagctgaacgctacaaagatcggaaatctgaggacaacaagagaatccgagaggaatttcgaaagcgtcttccccaaggcgttgtgtttgttaatacagacaagggatccatcatttccacctttcgtctgtcaagtgcgaaggctgccaatgaattatgggaaatgtacagtaaagggacatttcagtcaatgctacaagacgttttgatggaagacgcgctgaaagatgacacagaaaaaccagaaaaaccagtggagttacaactaaacctgggtaaagagcgttttgagaaaattcgcaagaaacttgcagacattgaacgtgatcaagaaagagagaggtcgctcagcttccctagcgaacaagataatggaagctttgcaggcgatgctgacgaagttgacatagagattcctccagttttcctgggaaccaaagcaaactgtattggtgggtgtgagcttgtgttgagagaatatcaaaaggagttggcagagccagccatccaaggcaaaaataccatcatctgtgcgcccactaacagcggaaaaacttatgtcgctattgatatcgctaaaaagcacctggattcgttcgaaagaaatgcagaccagtcaaaagcatcagccgcagcaacgaaagccagcaaagagcaaccaagggtggtgttcattgtcagcacagtgaaccttgtttttcagcaaaaagagcgatttgaagcttttctaggagataaatactcagtgggagaaatttcagggtcgaattgtgcggagatcccgctcaaattccttcttcagaataacgatgtggtagtgatgaccgctcagattctggtgaactcgctgaaggctgaagaaggagggaatcgagtggacctgaaagacatcagtttgttgttatttgatgaatgtcatcatgctcacaaagagcacccgtacaacagtatcatggagacgtatttggccttgaagtctcaagctggacatcagcaccgactaccacagattgtagggctgacagcttcccttggtacaggtaaagccaagagtcgggagaaggcaaaagagcatatcattcttgtttctgcgaacttggacgccgaagccatttcaacagtgaagaacaatctggaggaactcaaaagatacgtcaacattccttcgagagaagcactttttgtgcccaaagatgagcaggatccattcgaggggatcatctctaaggtgatggggaatattgaggctcaggtaaagaggttgaaaggaaaatcttacaattgcaaggctccgcacttagataagggtggtcagcagtatcgacaatgggtggagcaactctacaaagattcagtggcggacggggatcgatacttagtgacctacacagaacatctcagagagtaccacatcgcgttgaccttgaacgcaaacacgcgtatgaagaacgccaggaagtacctcacaaaatactttgaagcgttggacacagccaagtttacagagactgacaagaaattgaaacagcttttccacaaggcaatggcggtgttggacaagcacatcgaaaaagatggcgagcctcaaaatccgcgattgcttaaactcaaagaattgattttgaagaactacacggatgttcaaagccaacaagataaggaaaaagaatctgacaagagcagtggtgaaggtagcggtggacacgagggaggggaagattgtgctgacgagaaaacaaaggaacgtgacgctgggaatgaattgctgaataacgatggagaaaagaaggaagagggcatcgtcggtgaaaacgaagcgagtgccgtagtaatggagactgaaagataccgagaaggtgacgtttcaaagaaagatacgtcatcaggtaaagcagggaagatgcctcccgaggacgtcagcggtcactgttcgaagacacaagatgacacgagcatcgaagaggtcggtcagacaattgatggtgctggtgacctggaatacgctgccagggaacaatctgaagtccaaaacgaagtagatactgtgatggaagaagtgaacgaacaaggatccgagaccaacaagagcacttcatctgacgatgcagaagaggacaaggctctagatgaacagcgagcccaccatccagaatgggagggtcctaaaggcattttattcaccagaactcgcgagtctactgatgccttattagactggatcaaggaaaccgaggaactaaacgctgtcctcaggcccgaacatcttgttggtagcggagatggaaacatcgggatgactcagaaagagcaggaagaagttatcaagcgattcaaaacaggagaaaagaaccttctcttggcgaccagcgtggcggaagaagggttggacatcagtgactgtaactatgtcatccgttatgacatgatgggtaatgagatctcctctgtgcagtccaggggacgtgtcagagcaaaagatggcaagtacaccgtgttagtgggtcattcaggagctaagaaaagggatgagactaacatctttcgagaaagcttaatgatcgagggtctcaatctagtacaggtgatgagcccaacggcgttcactaagacggtcaaggaggttcaacgaaagattatccaggatcgctctctcaagaagctggtgcgtgccaatcagaaggcagaatttttaccagatgacgtgaacttccgctgtcgaaagtgcaaagagtttgtatgccaagcacacgatgtccgtcgcattaaaggaagtcaccatgttatcataagccgtgactgtcgtgacaataaggtggacataagagaacatccgcatccaaagaacatcgatggtatcgaaatgaataagaagattttctgcaaggaatgccatgaagattggggagtcactgctctcatttgttcctttgaatggctgtgcatcaagatcaacagctttgtagtggagttcccgaaagatgacaaaggtgatcgtctccggaggatcttcaaaaagtggaaagatctgccgtttgctatccaagaagctgagctggaagaggttctacagcttggtgccgaaaacgcggagacaaaagacttattggacctggacttatga

Transcript

g27232.t1

ATGCCTTTACGTTATACCTTTGATTGGTTTTTCAAATCTCAGTCTATATTTTCTCTTTCGTTTTTCGTTGACAAAGAGGACGACGCGAACGAGGAAGCTCCCGATGTTGATGGGTCCGGGCCAGATTACACAATGATTGGAACTGCTATTGatcttGCCATTCCAGGAAACCTCTTGCTTGCAGGAGGAGGCGAAGAGCAGGCCCACGATTGTAGTAGACTTGAAATGAGCTTAGCTGAACGCTACAAAGATCGGAAATCTGAGGACAACAAGAGAATCCGAGAGGAATTTCGAAAGCGTCTTCCCCAAGGCGTTGTGTTTGTTAATACAGACAAGGGATCCATCATTTCCACCTTTCGTCTGTCAAGTGCGAAGGCTGCCAATGAATTATGGGAAATGTACAGTAAAGGGACATTTCAGTCAATGCTACAAGACGTTTTGATGGAAGACGCGCTGAAAGATGACACAGAAAAACCAGAAAAACCAGTGGAGTTACAACTAAACCTGGGTAAAGAGCGTTTTGAGAAAATTCGCAAGAAACTTGCAGACATTGAACGTGATCAAGAAAGAGAGAGGTCGCTCAGCTTCCCTAGCGAACAAGATAATGGAAGCTTTGCAGGCGATGCTGACGAAGTTGACATAGAGATTCCTCCAGTTTTCCTGGGAACCAAAGCAAACTGTATTGGTGGGTGTGAGCTTGTGTTGAGAGAATATCAAAAGGAGTTGGCAGAGCCAGCCATCCAAGGCAAAAATACCATCATCTGTGCGCCCACTAACAGCGGAAAAACTTATGTCGCTATTGATATCGCTAAAAAGCACCTGGATTCGTTCGAAAGAAATGCAGACCAGTCAAAAGCATCAGCCGCAGCAACGAAAGCCAGCAAAGAGCAACCAAGGGTGGTGTTCATTGTCAGCACAGTGAACCTTGTTTTTCAGCAAAAAGAGCGATTTGAAGCTTTTCTAGGAGATAAATACTCAGTGGGAGAAATTTCAGGGTCGAATTGTGCGGAGATCCCGCTCAAATTCCTTCTTCAGAATAACGATGTGGTAGTGATGACCGCTCAGATTCTGGTGAACTCGCTGAAGGCTGAAGAAGGAGGGAATCGAGTGGACCTGAAAGACATCAGTTTGTTGTTATTTGATGAATGTCATCATGCTCACAAAGAGCACCCGTACAACAGTATCATGGAGACGTATTTGGCCTTGAAGTCTCAAGCTGGACATCAGCACCGACTACCACAGATTGTAGGGCTGACAGCTTCCCTTGGTACAGGTAAAGCCAAGAGTCGGGAGAAGGCAAAAGAGCATATCATTCTTGTTTCTGCGAACTTGGACGCCGAAGCCATTTCAACAGTGAAGAACAATCTGGAGGAACTCAAAAGATACGTCAACATTCCTTCGAGAGAAGCACTTTTTGTGCCCAAAGATGAGCAGGATCCATTCGAGGGGATCATCTCTAAGGTGATGGGGAATATTGAGGCTCAGGTAAAGAGGTTGAAAGGAAAATCTTACAATTGCAAGGCTCCGCACTTAGATAAGGGTGGTCAGCAGTATCGACAATGGGTGGAGCAACTCTACAAAGATTCAGTGGCGGACGGGGATCGATACTTAGTGACCTACACAGAACATCTCAGAGAGTACCAcatcgcgttgaccttgaacgCAAACACGCGTATGAAGAACGCCAGGAAGTACCTCACAAAATACTTTGAAGCGTTGGACACAGCCAAGTTTACAGAGACTGACAAGAAATTGAAACAGCTTTTCCACAAGGCAATGGCGGTGTTGGACAAGCACATCGAAAAAGATGGCGAGCCTCAAAATCCGCGATTGCTTAAACTCAAAGAATTGATTTTGAAGAACTACACGGATGTTCAAAGCCAACAAGATAAGGAAAAAGAATCTGACAAGAGCAGTGGTGAAGGTAGCGGTGGACACGAGGGAGGGGAAGATTGTGCTGACGAGAAAACAAAGGAACGTGACGCTGGGAATGAATTGCTGAATAACGATGGAGAAAAGAAGGAAGAGGGCATCGTCGGTGAAAACGAAGCGAGTGCCGTAGTAATGGAGACTGAAAGATACCGAGAAGGTGACGTTTCAAAGAAAGATACGTCATCAGGTAAAGCAGGGAAGATGCCTCCCGAGGACGTCAGCGGTCACTGTTCGAAGACACAAGATGACACGAGCATCGAAGAGGTCGGTCAGACAATTGATGGTGCTGGTGACCTGGAATACGCTGCCAGGGAACAATCTGAAGTCCAAAACGAAGTAGATACTGTGATGGAAGAAGTGAACGAACAAGGATCCGAGACCAACAAGAGCACTTCATCTGACGATGCAGAAGAGGACAAGGCTCTAGATGAACAGCGAGCCCACCATCCAGAATGGGAGGGTCCTAAAGGCATTTTATTCACCAGAACTCGCGAGTCTACTGATGCCTTATTAGACTGGATCAAGGAAACCGAGGAACTAAACGCTGTCCTCAGGCCCGAACATCTTGTTGGTAGCGGAGATGGAAACATCGGGATGACTCAGAAAGAGCAGGAAGAAGTTATCAAGCGATTCAAAACAGGAGAAAAGAACCTTCTCTTGGCGACCAGCGTGGCGGAAGAAGGGTTGGACATCAGTGACTGTAACTATGTCATCCGTTATGACATGATGGGTAATGAGATCTCCTCTGTGCAGTCCAGGGGACGTGTCAGAGCAAAAGATGGCAAGTACACCGTGTTAGTGGGTCATTCAGGAGCTAAGAAAAGGGATGAGACTAACATCTTTCGAGAAAGCTTAATGATCGAGGGTCTCAATCTAGTACAGGTGATGAGCCCAACGGCGTTCACTAAGACGGTCAAGGAGGTTCAACGAAAGATTATCCAGGATCGCTCTCTCAAGAAGCTGGTGCGTGCCAATCAGAAGGCAGAATTTTTACCAGATGACGTGAACTTCCGCTGTCGAAAGTGCAAAGAGTTTGTATGCCAAGCACACGATGTCCGTCGCATTAAAGGAAGTCACCATGTTATCATAAGCCGTGACTGTCGTGACAATAAGGTGGACATAAGAGAACATCCGCATCCAAAGAACATCGATGGTATCGAAATGAATAAGAAGATTTTCTGCAAGGAATGCCATGAAGATTGGGGAGTCACTGCTCTCATTTGTTCCTTTGAATGGCTGTGCATCAAGATCAACAGCTTTGTAGTGGAGTTCCCGAAAGATGACAAAGGTGATCGTCTCCGGAGGATCTTCAAAAAGTGGAAAGATCTGCCGTTTGCTATCCAAGAAGCTGAGCTGGAAGAGGTTCTACAGCTTGGTGCCGAAAACGCGGAGACAAAAGACTTATTGGACCTGGACTTATGA

Protein

Uniprot

Uniprot term	Description
O95786	Antiviral innate immune response receptor RIG-I OS=Homo sapiens OX=9606 GN=RIGI PE=1 SV=2
Q6Q899	Antiviral innate immune response receptor RIG-I OS=Mus musculus OX=10090 GN=Rigi PE=1 SV=2
Q9BYX4	Interferon-induced helicase C domain-containing protein 1 OS=Homo sapiens OX=9606 GN=IFIH1 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04851	ResIII	Type III restriction enzyme, res subunit	Family	Interproscan
PF11648	RIG-I_C-RD	C-terminal domain of RIG-I	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF18119	RIG-I_C	RIG-I receptor C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006935	Domain	Helicase/UvrB, N-terminal	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR021673	Domain	RIG-I-like receptor, C-terminal regulatory domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR038557	Homologous_superfamily	RIG-I-like receptor, C-terminal domain superfamily	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR051363	Family	RIG-I-like Receptor (RLR) Helicase	Interproscan
IPR041204	Domain	RIG-I-like receptor, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14074	HELICASE WITH DEATH DOMAIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12647	IFIH1, MDA5; interferon-induced helicase C domain-containing protein 1	EC:5.6.2.6	Pattern recognition receptors	ko04054	deepkoala