Gene detail

Detailed information of g27236.t1 in Montipora capitata

Genomic Location: xfSc0000012:111747...123967
NR annotation: CAH3155330.1, unnamed protein product [Porites lobata]
Species abbreviation MCAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g27236.t1

atgagacctcaagagaaacaactcctcgataaacggctgaaggattttatggaagaagtcatcccagttgaattatttccgtacctgccttgcttaattcctcaagacagagaggaaattgaggcgacacagactaaccatggacctatttatgccacgagaattctggtcgaccgcttgaaacgaagagatggagggttcgcaaactttgttcaagcgttacggaagtgtggaagcgcgcacacggccttactattggatccatattatatgattaaggatgacggcgcgaacgaagcagcccccgatactaatgggtcgggaccggcagattacacattgataggcacagctattgatcttgccattcctggaaacctcttgcttgcaggaggaagtgaagagccagcgtatgattgtagtagatttgaaatgagagtggctgaacgctacaaagaccggaaatctgaggacaacaaaagaattcgagaaaaatttcaaaagcgtcttccccaaggcgttgtgtttgttaatacagagaagggatccatcatttccacctttcggctgtcaagtgagaaggctgccagtgaattatgggaaatgtacactcaagggacgttccagtcgatgcttcaagaggttttgatggaagacgccctgaaagatgacgcagaaaagccagaaaaatcactggagttacaactaagcctggttaaagagcgttttgaaaaaattcgaaagaaacttgcagagattgaacgtgatcaagaaagagagaggtcgctctgcttccctggtgaacaagataatggaagctttgcagacgatgctgacgaagttgacatagagattcctcctgtgtttttgggaaccaaagcaaactctcttggtgggtgtgagcttgttttgagaaactatcaaaaggagttggcagagccagccatccaaggcaaaaataccatcatctgtgcgcccactaacagcgggaaaacttatgtcgctattgaaatcaccaaaaagcacctggattcgttcgaaagaaatgaagaccagtcagacgaatcagcagcaatgaaagccagcaaggagcaaccaagggttgtgttcattgtcagcacagtgaaccttgtttttcagcaaaaagagcgatttgaagctttcctaggagacaaatactcagtgggagaaatttcagggtcgaattgtgcggagatcccgctcaaattccttcttcaaaataacgatgtcgtagtgatgaccgctcagattctggtgaacgcactgaaagctgaagaaagagggaatcgagtggagctgaaagacatcagtctgttgttatttgatgaatgccatcatgctcacaaagagcacccgtacaacagtatcatggagacgtatttagccttaaagtctcaagctggtcatcagcaccgactaccacagattgtcgggctgacagcttcccttggtacaggtaaagctaagagtcgggagaaggcaaaagagcacattattcttgtttctgcgaacttggacgccgcagccatttcaacggtgaaggaaaatcgggaggaactcgaaaaatatgtcaacatcccttcgagagaagcacattttgtgcccaaagatgagcaggatccattcgagaagatcatctctaaggtcatggggaacattgaggctcaggtaaagaagtttaaacaaaacagttgcaaggctccgcacttagataagggtggtcagcagtatcgacaatgggtggagcaactctacaaagattcagtggcggaaggggatagatacttagtgacctacacagaacatctcagagagtaccacgtcgcgttgaccttgaatgcaaacacacgtatgaagaacgccaggaagtacctcacaaaatactttgaagctttagacacagacaagtttacagagactgacaagaaattgaaacagcttttccacaaggcaatgaaagtgctggacgaacacatcgaaaaatatggtgagcctcaaaatccgcgattgcttaaactcaaagaattgattttgaagaactacacagatgtccaaagccgacaagataaagaagataaatccagcaaaagcagtggtgaaggtagcggtggacatgagggaggggaagatggtactgacgagaaaataaaggaacgtgacgctgggaatgagttgctgaagaacgatgaaaaacagaaggaagagggcattggcggtgaaaacgaagcgagtgccgtagtaaaggagactgaaagatgcgaatgtgacgtttcaaagaaagatacttcatcagataaagcggggaagacacctcctgaggacgtcagcggtcacgcttcgaacacacaagatggcacgagcaccgaagaggtcagtcagacaattgatggagctggtggactggaatacgctgccagcgaacaatcggaagctcaaaacgaagtagatactgtgatggaagaagtggacgaacaaggacccgagaccaacgagagcacttcatctgacggtgcagaagaggacaaggctcttgatgaacagcgagcccatcatccagaatgggagggtcctaaaggcattttattcaccagaactcgcgagtctactgaagccttattagactggatcaaggaaaccgaggaactaaacgctgtcctcaggcccgaacatcttgttggtagcggagatggaaacagtaagtcgagaagatattcttgtaaagttaactcgcaaaagacgtactag

Transcript

g27236.t1

ATGAGACCTCAAGAGAAACAACTCCTCGATAAACGGCTGAAGGATTTTATGGAAGAAGTCATCCCAGTTGAATTATTTCCGTACCTGCCTTGCTTAATTCCTCAAGACAGAGAGGAAATTGAGGCGACACAGACTAACCATGGACCTATTTATGCCACGAGAATTCTGGTCGACCGCTTGAAACGAAGAGATGGAGGGTTCGCAAACTTTGTTCAAGCGTTACGGAAGTGTGGAAGCGCGCACACGGCCTTACTATTGGATCCATATTATATGATTAAGGATGACGGCGCGAACGAAGCAGCCCCCGATACTAATGGGTCGGGACCGGCAGATTACACATTGATAGGCACAGCTATTGatcttGCCATTCCTGGAAACCTCTTGCTTGCAGGAGGAAGTGAAGAGCCAGCGTATGATTGTAGTAGATTTGAAATGAGAGTGGCTGAACGCTACAAAGACCGGAAATCTGAGGACAACAAAAGAATTCGAGAAAAATTTCAAAAGCGTCTTCCCCAAGGCGTTGTGTTTGTTAATACAGAGAAGGGATCCATCATTTCCACCTTTCGGCTGTCAAGTGAGAAGGCTGCCAGTGAATTATGGGAAATGTACACTCAAGGGACGTTCCAGTCGATGCTTCAAGAGGTTTTGATGGAAGACGCCCTGAAAGATGACGCAGAAAAGCCAGAAAAATCACTGGAGTTACAACTAAGCCTGGTTAAAGAGCGTTTTGAAAAAATTCGAAAGAAACTTGCAGAGATTGAACGTGATCAAGAAAGAGAGAGGTCGCTCTGCTTCCCTGGTGAACAAGATAATGGAAGCTTTGCAGACGATGCTGACGAAGTTGACATAGAGATTCCTCCTGTGTTTTTGGGAACCAAAGCAAACTCTCTTGGTGGGTGTGAGCTTGTTTTGAGAAACTATCAAAAGGAGTTGGCAGAGCCAGCCATCCAAGGCAAAAATACCATCATCTGTGCGCCCACTAACAGCGGGAAAACTTATGTCGCtattgaaatcaccaaaaaGCACCTGGATTCGTTCGAAAGAAATGAAGACCAGTCAGACGAATCAGCAGCAATGAAAGCCAGCAAGGAGCAACCAAGGGTTGTGTTCATTGTCAGCACAGTGAACCTTGTTTTTCAGCAAAAAGAGCGATTTGAAGCTTTCCTAGGAGACAAATACTCAGTGGGAGAAATTTCAGGGTCGAATTGTGCGGAGATCCCGCTCAAATTCCTTCTTCAAAATAACGATGTCGTAGTGATGACCGCTCAGATTCTGGTGAACGCACTGAAAGCTGAAGAAAGAGGGAATCGAGTGGAGCTGAAAGACATCAGTCTGTTGTTATTTGATGAATGCCATCATGCTCACAAAGAGCACCCGTACAACAGTATCATGGAGACGTATTTAGCCTTAAAGTCTCAAGCTGGTCATCAGCACCGACTACCACAGATTGTCGGGCTGACAGCTTCCCTTGGTACAGGTAAAGCTAAGAGTCGGGAGAAGGCAAAAGAGCACATTATTCTTGTTTCTGCGAACTTGGACGCCGCAGCCATTTCAACGGTGAAGGAAAATCGGGAGGAACTCGAAAAATATGTCAACATCCCTTCGAGAGAAGCACATTTTGTGCCCAAAGATGAGCAGGATCCATTCGAGAAGATCATCTCTAAGGTCATGGGGAACATTGAGGCTCAGGTAAAGAAGTTTAAACAAAACAGTTGCAAGGCTCCGCACTTAGATAAGGGTGGTCAGCAGTATCGACAATGGGTGGAGCAACTCTACAAAGATTCAGTGGCGGAAGGGGATAGATACTTAGTGACCTACACAGAACATCTCAGAGAGTACCAcgtcgcgttgaccttgaatgCAAACACACGTATGAAGAACGCCAGGAAGTACCTCACAAAATACTTTGAAGCTTTAGACACAGACAAGTTTACAGAGACTGACAAGAAATTGAAACAGCTTTTCCACAAGGCAATGAAAGTGCTGGACGAACACATCGAAAAATATGGTGAGCCTCAAAATCCGCGATTGCTTAAACTCAAAGAATTGATTTTGAAGAACTACACAGATGTCCAAAGCCGACAAGATAAAGAAGATAAATCCAGCAAAAGCAGTGGTGAAGGTAGCGGTGGACATGAGGGAGGGGAAGATGGTACTGACGAGAAAATAAAGGAACGTGACGCTGGGAATGAGTTGCTGAAGAACGATGAAAAACAGAAGGAAGAGGGCATTGGCGGTGAAAACGAAGCGAGTGCCGTAGTAAAGGAGACTGAAAGATGCGAATGTGACGTTTCAAAGAAAGATACTTCATCAGATAAAGCGGGGAAGACACCTCCTGAGGACGTCAGCGGTCACGCTTCGAACACACAAGATGGCACGAGCACCGAAGAGGTCAGTCAGACAATTGATGGAGCTGGTGGACTGGAATACGCTGCCAGCGAACAATCGGAAGCTCAAAACGAAGTAGATACTGTGATGGAAGAAGTGGACGAACAAGGACCCGAGACCAACGAGAGCACTTCATCTGACGGTGCAGAAGAGGACAAGGCTCTTGATGAACAGCGAGCCCATCATCCAGAATGGGAGGGTCCTAAAGGCATTTTATTCACCAGAACTCGCGAGTCTACTGAAGCCTTATTAGACTGGATCAAGGAAACCGAGGAACTAAACGCTGTCCTCAGGCCCGAACATCTTGTTGGTAGCGGAGATGGAAACAGTAAGTCGAGAAGATATTCTTGTAAAGTTAACTCGCAAAAGACGTACTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O95786	Antiviral innate immune response receptor RIG-I OS=Homo sapiens OX=9606 GN=RIGI PE=1 SV=2
Q9BYX4	Interferon-induced helicase C domain-containing protein 1 OS=Homo sapiens OX=9606 GN=IFIH1 PE=1 SV=3
Q8R5F7	Interferon-induced helicase C domain-containing protein 1 OS=Mus musculus OX=10090 GN=Ifih1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001752 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16739 all species →	CARD_2	Caspase recruitment domain	Domain	Interproscan
PF18119 all species →	RIG-I_C	RIG-I receptor C-terminal domain	Domain	Interproscan
PF04851 all species →	ResIII	Type III restriction enzyme, res subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR051363 all species →	Family	RIG-I-like Receptor (RLR) Helicase	Interproscan
IPR031964 all species →	Domain	Caspase recruitment domain	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR041204 all species →	Domain	RIG-I-like receptor, C-terminal	Interproscan
IPR006935 all species →	Domain	Helicase/UvrB, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14074 all species →	HELICASE WITH DEATH DOMAIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g27236.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.