Detailed information of g273.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_047125795.1, vacuolar protein sorting-associated protein 13A [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q96RL7Intermembrane lipid transfer protein VPS13A OS=Homo sapiens OX=9606 GN=VPS13A PE=1 SV=2
A1Z713Intermembrane lipid transfer protein Vps13 OS=Drosophila melanogaster OX=7227 GN=Vps13 PE=1 SV=2
Q8BX70Intermembrane lipid transfer protein VPS13C OS=Mus musculus OX=10090 GN=Vps13c PE=1 SV=2
Gene familySubfamily
Transcription Factors Familyzf-C2H2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF06650VPS13_VABVacuolar-sorting associated protein 13, adaptor binding domainDomainInterproscan
PF16909VPS13_DH-likeVacuolar-sorting-associated 13 protein, DH-like domainFamilyInterproscan
PF21679VPS13_CIntermembrane lipid transfer protein VPS13, C-terminalDomainInterproscan
PF00117GATaseGlutamine amidotransferase class-IDomainInterproscan
PF00988CPSase_sm_chainCarbamoyl-phosphate synthase small chain, CPSase domainDomainInterproscan
PF01477PLATPLAT/LH2 domainDomainInterproscan
PF00096zf-C2H2Zinc finger, C2H2 typeDomainInterproscan
PF20692cpSF2-GREB1Circularly permuted SF2 helicase found in GREB1 proteinsDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR026847FamilyVacuolar protein sorting-associated protein 13Interproscan
IPR009543DomainVacuolar protein sorting-associated protein 13, VPS13 adaptor binding domainInterproscan
IPR031645DomainVacuolar protein sorting-associated protein 13, DH-like domainInterproscan
IPR049424DomainIntermembrane lipid transfer protein VPS13, C-terminalInterproscan
IPR002474DomainCarbamoyl-phosphate synthase small subunit, N-terminal domainInterproscan
IPR029062Homologous_superfamilyClass I glutamine amidotransferase-likeInterproscan
IPR006274FamilyCarbamoyl-phosphate synthase, small subunitInterproscan
IPR035686DomainCarbamoyl-phosphate synthase small subunit, GATase1 domainInterproscan
IPR036480Homologous_superfamilyCarbamoyl-phosphate synthase small subunit, N-terminal domain superfamilyInterproscan
IPR017926DomainGlutamine amidotransferaseInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR052970FamilyInner ear hair cell lipoxygenase homology domain-containing proteinInterproscan
IPR001024DomainPLAT/LH2 domainInterproscan
IPR036392Homologous_superfamilyPLAT/LH2 domain superfamilyInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR028422FamilyGREB1Interproscan
IPR048657DomainGREB1-like, circularly permuted SF2 helicase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16166VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13Interproscan
PTHR11405CARBAMOYLTRANSFERASE FAMILY MEMBERInterproscan
PTHR33327ENDONUCLEASEInterproscan
PTHR45901PROTEIN CBG12474Interproscan
PTHR14003TRANSCRIPTIONAL REPRESSOR PROTEIN YYInterproscan
PTHR15720GREB1-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006623Biological Processprotein targeting to vacuoleInterproscan
GO:0019898Cellular Componentextrinsic component of membraneInterproscan
GO:0045053Biological Processprotein retention in Golgi apparatusInterproscan
GO:0004088Molecular Functioncarbamoyl-phosphate synthase (glutamine-hydrolyzing) activityInterproscan
GO:0006207Biological Process'de novo' pyrimidine nucleobase biosynthetic processInterproscan
GO:0006541Biological Processglutamine metabolic processInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005951Cellular Componentcarbamoyl-phosphate synthase complexInterproscan
GO:0006526Biological ProcessL-arginine biosynthetic processInterproscan
GO:0006807Biological Processobsolete nitrogen compound metabolic processInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000790Cellular ComponentchromatinInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005667Cellular Componenttranscription regulator complexInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0031519Cellular ComponentPcG protein complexInterproscan
GO:0007275Biological Processmulticellular organism developmentInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K01956carA, CPA1; carbamoyl-phosphate synthase small subunitEC:6.3.5.5
Alanine, aspartate and glutamate metabolismko00250deepkoala

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