Gene detail

Detailed information of g27359.t1 in Montipora capitata

Genomic Location: xfSc0000020:43404...52720
NR annotation: XP_044184648.1, coilin-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g27359.t1

atgtcaggtctcgttaggattcggctaaactttcagcggtatcccgaatttcccgagatcaaaaactcctggttcttggtggatacttcaacgtgtcgcacgatcgccgacttagagtatttagtaaagaagagattcggattattgtcaaacaacgctttgattaatcttttgcttgatgactaccttttgccgtcacaagagaaaattgagataattcagcacaatgataacctaaggattaagacaaagaaaagattgactgacaagagccccatacattcaacaagttcaaatgtttcagcaaacaagacgtgtgaaacattacaaggaaactcgtttaaaagttccgaaaaggaacaaaatcccaggcatgtaggaaaaagaaagagcactgtggagcttccaaaatcaaacaccaagaaaagcaagacaagtggaattgtcaacttcaacgattgttgtaccatgcaaaatggtttggacagtgatcctacttcctctgaaagtgacagctttacagaatctacattaaagcgacccattaaaagaaaacagagtgataaaagtttgaaaactcttgcccaggtggagaaaaagaaagcaactgttagggaaaccggaaatattcaatgtaccggcttaaactttgatggtagctcctctgacagctctagctcaacagagactatgtcaaaacctaatagcaaaacaaaacgcaaaattggcaatggtaaacttaatgctgagaaacgaaagacaactgcaaagagaacagcaaagaaattggtggatagcaaagatgagctaaatactgattcaagttcctctgacagctccagctctacagaaactaagtcaaaacctgaacccaagacaaaacacatcattagaaatttgaaaactaatgctgagaaaggaaaggtgaccctgtcacaaacagggcaaaatcatggaaaaatggaaagtgattccagttcatctgaaagttccagttcaagagtatcatcaaaatgtacaagtgaaaagaaactcaaatctggaaatttcaaagagcttagtgtgaaaagaaaaacaaccaaattaggtgaaaaagtaaaaaatgctgataaaaataacaagggagcgaggtccgtaaatggaggaactgccaaatcatctattgtagttttgcaaggccaaagcaaagagaaagatgttttggaaggagagagttctacatctaccagtgactccagtgaaactgatgagttagctaatgttgcattgatggaatctaagttggaacataagcaaacctcatcatcattgtccacatcatcattgtccacatcatcaacatcatcatctttgccgagttcagcaccttcaattcagaaggtgaattccaaagcaggtaacatccaaagcaacaagtcccaagatgagaaaaggaaagataagaatgtgttgtcttcgtcaacatcattactaccatccgcaaggcaaacatcatcatcaagttctccactggaacctcatagacggtattcctgccccacagctgacaaagtatcaaaaaggcatctttcaaaggattttaacaaaacaacatcacccttagctttatctgtaacacctactggacagggaagttatgaacagaaaacacctggacaaggaggaagtggaaagctaagctccagcttctcagccagtcacataagatttgattcagatgaggacgacattgaagagcagcaaaacgatgactcaatgcacaaaaactctgatagcactggagaaaccaggctaaatgctgttatggcagacggtcagtgtgagcaaatcgaccaaaccatttccaggagggatgttgaaagaaaggaaccttctcagccagattacacttcttgtccgccgcttcatggccctcctcgagctggcgacaaaatagcgtataagaaaggttctgtgatatcttatgaggcaaaaaccggtgaggttaccgtggaactcacaagagattcactgaagaggacccaaggtgatggaaacgttagtggaaaattcgagttgatttatgaagaagaggaaggggaggagaatcaaaaaatggcagagaatgaacaactggaaacacaggtgagaaggatgacgaggcagctgctataa

Transcript

g27359.t1

ATGTCAGGTCTCGTTAGGATTCGGCTAAACTTTCAGCGGTATCCCGAATTTCCCGAGATCAAAAACTCCTGGTTCTTGGTGGATACTTCAACGTGTCGCACGATCGCCGACTTAGAGTATTTAGTAAAGAAGAGATTCGGATTATTGTCAAACAACGCTTTGATTAATCTTTTGCTTGATGACTACCTTTTGCCGTCACAAGAGAAAATTGAGATAATTCAGCACAATGATAACCTAAGGATTAAGACAAAGAAAAGATTGACTGACAAGAGCCCCATACATTCAACAAGTTCAAATGTTTCAGCAAACAAGACGTGTGAAACATTACAAGGAAACTCGTTTAAAAGTTCCGAAAAGGAACAAAATCCCAGGCATGtaggaaaaagaaagagcactGTGGAGCTTCCAAAATCAAACACCAAGAAAAGCAAGACAAGTGGAATTGTCAACTTCAACGATTGTTGTACCATGCAAAATGGTTTGGACAGTGATCCTACTTCCTCTGAAAGTGACAGCTTTACAGAATCTACATTAAAGCGACccattaaaagaaaacagagtGATAAAAGTTTGAAAACTCTTGCCCAGGTGGAGAAAAAGAAAGCAACTGTTAGGGAAACCGGAAATATTCAATGTACCGGCTTAAACTTTGATGGTAGCTCCTCTGACAGCTCTAGCTCAACAGAGACTATGTCAAAACCTAATAGCAAAACAAAACGCAAAATTGGCAATGGTAAACTTAATGCTGAGAAACGAAAGACAACTGCAAAGAGAACAGCAAAGAAATTGGTGGATAGCAAAGATGAGCTAAATACTGATTCAAGTTCCTCTGACAGCTCCAGCTCTACAGAAACTAAGTCAAAACCTGAACCCAAGACAAAACACATCATTAGAAATTTGAAAACTAATGCTGAGAAAGGAAAGGTGACCCTGTCACAAACAGGGCAAAATCATGGAAAAATGGAAAGTGATTCCAGTTCATCTGAAAGTTCCAGTTCAAGAGTATCATCAAAATGTACAAGTGAAAAGAAACTCAAATCTGGAAATTTCAAAGAGCTTAgtgtgaaaagaaaaacaaccaaattaggtgaaaaagtaaaaaatgctGATAAAAATAACAAGGGAGCGAGGTCCGTAAATGGAGGAACTGCCAAATCATCTATTGTAGTTTTGCAAGGCCAAAGCAAAGAGAAAGATGTTTTGGAAGGAGAGAGTTCTACATCTACCAGTGACTCCAGTGAAACTGATGAGTTAGCTAATGTTGCATTGATGGAATCTAAGTTGGAACATAAGCAAACCTCATCATCATTGTCCACATCATCATTGTccacatcatcaacatcatcatcttTGCCGAGTTCAGCACCTTCAATTCAGAAGGTGAATTCCAAAGCAGGTAACATCCAAAGCAACAAGTCCCAAGATGAGAAAAGGAAAGATAAGAATGTGTTGTCTTCGTCAACATCATTACTACCATCCGCAAGGcaaacatcatcatcaagtTCTCCACTGGAACCTCATAGACGGTATTCCTGCCCCACAGCTGACAAAGTATCAAAAAGGCATCTTTCAAaggattttaacaaaacaacatCACCCTTAGCTTTATCTGTAACACCTACTGGACAGGGAAGTTATGAACAGAAAACACCTGGACAAGGAGGAAGTGGAAAGCTAAgCTCCAGCTTCTCAGCCAGTCACATAAGATTTGATTCAGATGAGGACGACATTGAAGAGCAGCAAAACGATGACTCAATGCACAAAAACTCTGATAGCACTGGAGAAACCAGGCTAAATGCTGTTATGGCAGACGGTCAGTGTGAGCAAATCGACCAAACCATTTCCAGGAGGGATGTTGAAAGAAAGGAACCTTCTCAGCCAGATTACACTTCTTGTCCGCCGCTTCATGGCCCTCCTCGAGCTGGCGACAAAATAGCGTATAAGAAAGGTTCTGTGATATCTTATGAGGCAAAAACCGGTGAGGTTACCGTGGAACTCACAAGAGATTCACTGAAGAGGACCCAAGGTGATGGAAACGTTAGTGGAAAATTCGAGTTGATTTATGAAGAAGAGGAAGGGGAGGAGAATCAAAAAATGGCAGAGAATGAACAACTGGAAACACAGGTGAGAAGGATGACGAGGCAGCTGCTATAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007144 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15862 all species →	Coilin_N	Coilin N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031722 all species →	Domain	Coilin, N-terminal domain	Interproscan
IPR024822 all species →	Family	Coilin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15197 all species →	COILIN P80	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000387 all species →	Biological Process	spliceosomal snRNP assembly	Interproscan
GO:0015030 all species →	Cellular Component	Cajal body	Interproscan
GO:0030619 all species →	Molecular Function	U1 snRNA binding	Interproscan
GO:0030620 all species →	Molecular Function	U2 snRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13150	COIL, CLN80; coilin	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g27359.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

88.4Max TPM

25.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	27.22	88.39
whole organisms · low pH treatment	15	15	22.55	65.52
whole organisms · extra low pH treatment pH treatment	12	12	26.88	65.85

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	88.39
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	77.35
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	66.38
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	57.73
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	48.83
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	23.69
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	22.36
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	21.28
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	20.45
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	19.50
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	18.91
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	18.55
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	15.99
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	15.90
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	15.50
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	10.92
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	9.54
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	6.64
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	5.36
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	4.26
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	4.03
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	65.52
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	55.66
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	51.06
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	21.73
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	21.20
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	19.75
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	19.70
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	18.35
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	15.42
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	13.00
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	11.85
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	10.42
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	6.28
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	4.49
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	3.78
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	65.85
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	63.04
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	55.03
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	22.58
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	21.37
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	19.20
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	18.35
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	16.83
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	15.82
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	15.63
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	4.58
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	4.22

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.