Detailed information of g2736.t1 in Acropora digitifera

Genomic Location: chr2Alt:3803764...3832798
NR annotation: XP_044175601.1, A disintegrin and metalloproteinase with thrombospondin motifs 6-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8TE57A disintegrin and metalloproteinase with thrombospondin motifs 16 OS=Homo sapiens OX=9606 GN=ADAMTS16 PE=1 SV=3
Q69Z28A disintegrin and metalloproteinase with thrombospondin motifs 16 OS=Mus musculus OX=10090 GN=Adamts16 PE=2 SV=2
Q9UKP5A disintegrin and metalloproteinase with thrombospondin motifs 6 OS=Homo sapiens OX=9606 GN=ADAMTS6 PE=1 SV=2
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17771
all species →
ADAMTS_CR_2ADAMTS cysteine-rich domain 2DomainInterproscan
PF00090
all species →
TSP_1Thrombospondin type 1 domainDomainInterproscan
PF01421
all species →
ReprolysinReprolysin (M12B) family zinc metalloprotease DomainInterproscan
PF19236
all species →
ADAMTS_CR_3ADAMTS cysteine-rich domainDomainInterproscan
PF01562
all species →
Pep_M12B_propepReprolysin family propeptideFamilyInterproscan
PF00431
all species →
CUBCUB domainDomainInterproscan
PF19030
all species →
TSP1_ADAMTSThrombospondin type 1 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000859
all species →
DomainCUB domainInterproscan
IPR036383
all species →
Homologous_superfamilyThrombospondin type-1 (TSP1) repeat superfamilyInterproscan
IPR035914
all species →
Homologous_superfamilySpermadhesin, CUB domain superfamilyInterproscan
IPR001590
all species →
DomainPeptidase M12B, ADAM/reprolysinInterproscan
IPR041645
all species →
DomainADAMTS, cysteine-rich domain 2Interproscan
IPR000884
all species →
RepeatThrombospondin type-1 (TSP1) repeatInterproscan
IPR024079
all species →
Homologous_superfamilyMetallopeptidase, catalytic domain superfamilyInterproscan
IPR013273
all species →
FamilyADAMTS/ADAMTS-likeInterproscan
IPR050439
all species →
FamilyADAMTS and ADAMTS-likeInterproscan
IPR045371
all species →
DomainADAMTS/ADAMTS-like, cysteine-rich domain 3Interproscan
IPR002870
all species →
DomainPeptidase M12B, propeptideInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13723
all species →
ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004222
all species →
Molecular Functionmetalloendopeptidase activityInterproscan
GO:0006508
all species →
Biological ProcessproteolysisInterproscan
GO:0008237
all species →
Molecular Functionmetallopeptidase activityInterproscan
GO:0030198
all species →
Biological Processextracellular matrix organizationInterproscan
GO:0031012
all species →
Cellular Componentextracellular matrixInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for g2736.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g2736.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples
39TPM > 0
1Conditions
14.1Max TPM
5.9Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
Coral branch 39 39 5.89 14.08

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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