Gene detail

Detailed information of g27403.t1 in Acropora digitifera

Genomic Location: chr13Alt:4773555...4775773
NR annotation: XP_015752887.1, PREDICTED: ankyrin repeat domain-containing protein 24-like [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g27403.t1

ATGAGTATCCATGTCGAATGCAGTGACAAGACTCCCCTTCACCGCGCAGCCGTTGAAGGGCGTTTGGAAGAGGTAAAGATGCTTATTGCTTCCCGCGGTGCGGATGTAAACGCCCAGACAAGGCGCGGTCGCGCGCCCTTACATTACGCTGCCGAAAATGGACACTGTGAGATAGTAAACCTTTTATTGAGGTCAAAAGCTAAGGTCAATCTTCCAAACAAATGGGGAAGGGCAGCACTTCATTATGCCGCCAGTAAACACAGGGTGGATTGCATAAAAATCTTAATTGATAACGGAGCTGATCTTGATTGGCAAGACGTCGATGCCCAGACCCCGTTGTACCACGCGGTGGCTGCGTCGATGTATGACGATGCCAGGCAACTTGGAACTCACGAGCGAATTACTGAAATGACTGACGCAGGGGGGCGCGACAGTACGATGCTTGACTTCGGAATGCGTGACACGGAAGTCCGTGACACTCATCTCAAAGTCCATCGTACCTTGCTGCTTTTGATAACAAATGGAGCCAATCCAGATACGCCAGACAAAAGCGGTATTACTCCTCTTCATGTAGCGGCCGAGCAGGGCAACGCAAAGATATGTTCTTATTTAATAAAGGAAGGAAAAGCGAACATAAATGCCGTCGATCAACATGGCTCTACGCCCCTCCACTACGCTTGCTTTCAAGGCCGGAGGCCTATTGCAGACCTTCTTCTCTATCATGGCGCTTGCTCTACTACTCAAGACAACTCTGGGCTCTTGCCAGAAACTTATTTAGAAAAACAATCAAATTATCCTATATCCTATATTCACAGAAATGGGTGTGACATAAATAGAAATGAATCGGAAGTTTCAAACAGCTTAAAAATAATCGACGGAATCCCATTTTTGGCTAAGGAGGAGGCACTGAGCTCGTTCCTTTTACAGATAGAGGAAACTGAGGGCTTAGGACGCGTGAAGCAAACGGAGGAAGTGCAAAGGATAGAAAATGACATTCGTTATTACATCGAAACAACTTTACAGCTCATGTTACGGGAACAGCCCAGGTTGCGTTATGCTCTCGTTAGAGCTGGAAGCACCGCTGAAAACACGAAAGTTGGCGAACCAGATGAATTGGATTACATGTGTTGTTTGAGGGAGCTGTCAAATGTCAGCTATTCCTACACATCTCCAAGCGACCCCCCTGGATATGCAAGAATAAAAGTTAAAAGTCATGGGTTGAAAACATGGGGAGATTTGGTGAACAAGGACGGCTTCGTAGAAGCAGAGAAGCTCCACGAGTGGTTTCATTTCATTTTTGATCGTTTCTCGGAAACTTCTGATCTCACAGCTATGAGCAGCTGTCTTCACAAGATGCGCGATTACAAACCCCGGCCTGAGCTTGGGGTGACTGTGGACATGTCCAAGACCAAGCCAGGGTCGCAGTTGTACTTTATGTGGCGTGGATGCCAATTTAAACGACTGATTATCTCAGTGGATCTTATTCCTGTCATCGAAATCATTGGCTGGCCCCACGCAGCTCAAGTTCCACCGCAAAATGGCTGCGACCGATATCATGTCATTCCTAAAGTGTCCCTAGAAATCCGGACAAATCCGTCTGTGGGATTGTTTTGGCGTGTTTCAACCGCCTTGGCGGAGAGATGCTTATTTAACGGGATGGAGCCCGCGGAACGTGCCTGCTATACGGTATGCAAGTCACTAGTTAACCATCCAGACCCGCAAAAACTTTTATCTCACTACACAAACTTCGTCTCAACCTCGTTCCCAGACTCTTTTGTTCAACTTGACGTAAACGGCAGAGAGTCTGGGAACGAGGATACTCGTATCAACTCTATCATATGCGAAGACATCAATAAACTGTCGAGTGTTTTAGACCAGTTGTCACCTTACAAAGATGATATTCACTCATATCATCTGAAAATGATTTTCTTAAGACTGAGAGAGCAGAGAAAGAAAATCTATGATTGGAAAACGAGCAGCGTCGGTCAACGAGTTTTGGAAATCTTGAACATGTTACTAGAAGAGCTTAGGCAGAGCTGCGTGCTGTCATATTTTCTTCTCGACTACAACGAGTTGTCAACACGGAAACCTGAGCCGTGTAACCTCCCCTTGTAG

Transcript

chr13Alt.g27403.t1

AGGTAAATTGATTTTAACCAAGTGCCTTGTTCCCTCCAGCAATACTGAAGATTATCATCAAAACTACTCCCATGAGTATCCATGTCGAATGCAGTGACAAGACTCCCCTTCACCGCGCAGCCGTTGAAGGGCGTTTGGAAGAGGTAAAGATGCTTATTGCTTCCCGCGGTGCGGATGTAAACGCCCAGACAAGGCGCGGTCGCGCGCCCTTACATTACGCTGCCGAAAATGGACACTGTGAGATAGTAAACCTTTTATTGAGGTCAAAAGCTAAGGTCAATCTTCCAAACAAATGGGGAAGGGCAGCACTTCATTATGCCGCCAGTAAACACAGGGTGGATTGCATAAAAATCTTAATTGATAACGGAGCTGATCTTGATTGGCAAGACGTCGATGCCCAGACCCCGTTGTACCACGCGGTGGCTGCGTCGATGTATGACGATGCCAGGCAACTTGGAACTCACGAGCGAATTACTGAAATGACTGACGCAGGGGGGCGCGACAGTACGATGCTTGACTTCGGAATGCGTGACACGGAAGTCCGTGACACTCATCTCAAAGTCCATCGTACCTTGCTGCTTTTGATAACAAATGGAGCCAATCCAGATACGCCAGACAAAAGCGGTATTACTCCTCTTCATGTAGCGGCCGAGCAGGGCAACGCAAAGATATGTTCTTATTTAATAAAGGAAGGAAAAGCGAACATAAATGCCGTCGATCAACATGGCTCTACGCCCCTCCACTACGCTTGCTTTCAAGGCCGGAGGCCTATTGCAGACCTTCTTCTCTATCATGGCGCTTGCTCTACTACTCAAGACAACTCTGGGCTCTTGCCAGAAACTTATTTAGAAAAACAATCAAATTATCCTATATCCTATATTCACAGAAATGGGTGTGACATAAATAGAAATGAATCGGAAGTTTCAAACAGCTTAAAAATAATCGACGGAATCCCATTTTTGGCTAAGGAGGAGGCACTGAGCTCGTTCCTTTTACAGATAGAGGAAACTGAGGGCTTAGGACGCGTGAAGCAAACGGAGGAAGTGCAAAGGATAGAAAATGACATTCGTTATTACATCGAAACAACTTTACAGCTCATGTTACGGGAACAGCCCAGGTTGCGTTATGCTCTCGTTAGAGCTGGAAGCACCGCTGAAAACACGAAAGTTGGCGAACCAGATGAATTGGATTACATGTGTTGTTTGAGGGAGCTGTCAAATGTCAGCTATTCCTACACATCTCCAAGCGACCCCCCTGGATATGCAAGAATAAAAGTTAAAAGTCATGGGTTGAAAACATGGGGAGATTTGGTGAACAAGGACGGCTTCGTAGAAGCAGAGAAGCTCCACGAGTGGTTTCATTTCATTTTTGATCGTTTCTCGGAAACTTCTGATCTCACAGCTATGAGCAGCTGTCTTCACAAGATGCGCGATTACAAACCCCGGCCTGAGCTTGGGGTGACTGTGGACATGTCCAAGACCAAGCCAGGGTCGCAGTTGTACTTTATGTGGCGTGGATGCCAATTTAAACGACTGATTATCTCAGTGGATCTTATTCCTGTCATCGAAATCATTGGCTGGCCCCACGCAGCTCAAGTTCCACCGCAAAATGGCTGCGACCGATATCATGTCATTCCTAAAGTGTCCCTAGAAATCCGGACAAATCCGTCTGTGGGATTGTTTTGGCGTGTTTCAACCGCCTTGGCGGAGAGATGCTTATTTAACGGGATGGAGCCCGCGGAACGTGCCTGCTATACGGTATGCAAGTCACTAGTTAACCATCCAGACCCGCAAAAACTTTTATCTCACTACACAAACTTCGTCTCAACCTCGTTCCCAGACTCTTTTGTTCAACTTGACGTAAACGGCAGAGAGTCTGGGAACGAGGATACTCGTATCAACTCTATCATATGCGAAGACATCAATAAACTGTCGAGTGTTTTAGACCAGTTGTCACCTTACAAAGATGATATTCACTCATATCATCTGAAAATGATTTTCTTAAGACTGAGAGAGCAGAGAAAGAAAATCTATGATTGGAAAACGAGCAGCGTCGGTCAACGAGTTTTGGAAATCTTGAACATGTTACTAGAAGAGCTTAGGCAGAGCTGCGTGCTGTCATATTTTCTTCTCGACTACAACGAGTTGTCAACACGGAAACCTGAGCCGTGTAACCTCCCCTTGTAGTTCGACTGAAATCTAGAGCGATCATTTCGAACG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF20266 all species →	Mab-21_C	Mab-21 protein HhH/H2TH-like domain	Domain	Interproscan
PF03281 all species →	Mab-21	Mab-21 protein nucleotidyltransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR050663 all species →	Family	Ankyrin Repeat and SOCS Box	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR046906 all species →	Domain	Mab-21-like, HhH/H2TH-like domain	Interproscan
IPR046903 all species →	Domain	Mab-21-like, nucleotidyltransferase domain	Interproscan
IPR024810 all species →	Family	MAB21L/Cyclic GMP-AMP synthase-like receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24193 all species →	ANKYRIN REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g27403.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.