Detailed information of g27443.t1 in Acropora digitifera

Genomic Location: chr13Alt:5432204...5451430
NR annotation: XP_044184820.1, polycystic kidney disease protein 1-like 2 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7TN88Polycystin-1-like protein 2 OS=Mus musculus OX=10090 GN=Pkd1l2 PE=2 SV=1
Q2EG98Polycystin-1-like protein 3 OS=Mus musculus OX=10090 GN=Pkd1l3 PE=1 SV=3
Q9Z0T6Polycystin family receptor for egg jelly OS=Mus musculus OX=10090 GN=Pkdrej PE=2 SV=2
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08016
all species →
PKD_channelPolycystin cation channelFamilyInterproscan
PF01825
all species →
GPSGPCR proteolysis site, GPS, motif MotifInterproscan
PF02010
all species →
REJREJ domainFamilyInterproscan
PF01477
all species →
PLATPLAT/LH2 domainDomainInterproscan
PF20519
all species →
Polycystin_domPolycystin domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000203
all species →
Conserved_siteGPS motifInterproscan
IPR013122
all species →
DomainPolycystin cation channel, PKD1/PKD2Interproscan
IPR046338
all species →
Homologous_superfamilyGAIN domain superfamilyInterproscan
IPR001024
all species →
DomainPLAT/LH2 domainInterproscan
IPR051223
all species →
FamilyPolycystinInterproscan
IPR002859
all species →
DomainPKD/REJ-like domainInterproscan
IPR036392
all species →
Homologous_superfamilyPLAT/LH2 domain superfamilyInterproscan
IPR003915
all species →
FamilyPolycystic kidney disease type 2 proteinInterproscan
IPR014010
all species →
DomainREJ domainInterproscan
IPR046791
all species →
DomainPolycystin domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10877
all species →
POLYCYSTIN FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0005262
all species →
Molecular Functioncalcium channel activityInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0050982
all species →
Biological Processdetection of mechanical stimulusInterproscan
GO:0005509
all species →
Molecular Functioncalcium ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K04988PKD1L2; polycystin 1L2-Ion channelsko04040deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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