Gene detail

Detailed information of g27480.t1 in Montipora capitata

Genomic Location: xfSc0000028:218223...234216
NR annotation: XP_044164613.1, small G protein signaling modulator 2-like isoform X2 [Acropora millepora]
Species abbreviation MCAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g27480.t1

atgtcactcactatgttatgttttgcagagagccccattcttaaaatgaagttaaactttactgcctcactaaacagtagtgtcaacagaaaaattaatggctataacatcagtgggcattgtggcaagtttttgtggattagaattgctttgttagaaaaacttctaagcaagattgtggaggatcttcataccaatgctagccaattctatgagcctgaagcactcttgcgtgaccctgctgatggaagaatattcattgaactcttagatggtccatgtgctcttgatttctcaaagatgaagactcctgatagttattggactgatcccactgcagatgaattagttcaaagacacagaattcacagtgggttgtttcaacagatgcctggaatgccaacgtcaacttctaggccacaactcggagctaggatgtcatcttatgaggaaaacttagccgtggctccatcattagccagagaacacatagagtcgcttcatcagaactcccatgctgcacttttgtacggcaaaaataatgtctaccttgaaccgcatgaagaacaccccattgcaggttacttgtcattgcacaagagtaatgatagtttgctcctaaagtggacgccaaataagttgatgagtggatcatgtgaaagagaaaagagtcaattttgggactatgcccttacagtcaacttacatgatgttgtgtatatccactgtcatcagcatggtgtttatggtgtggttatactcattggacaagatggtgtccagcgtccaccaattcgtttcccaacaacgggctctctgctgtcattcttaaactgccttgagaatggacttcatccacatggggagcttgacccacccctatttaatccacgctccaaaggacttggtctgccacgactcaaaaagaccccttcaggggacaacctgctgctaaatgtgttgtcaaagggagaaaacacaaaccaggattatgtgtttagattggtgtctggagcaaagtcagaggacttggtgagtaaagaaatggatcgattttcttcccaaaagtctttcaagaagcctactggtttgccatggaaacgacaagacttcagtgcacgagtgcagtccagttttaaaagaaaccagaaacagtcttctccacgcactatggaatgtctaagcactgcctgtgaaaccatgagaagacagatcactcttcgagccttcaatggatggttatcttatgtgcgacatctgaagactgtgcgaacacacctattatggcttgtccatcataataaggtcacttcagaagagaatggagtggattactctcaaggcctaacggaacaagtctggaggggaatgtaccacaaaggacagatcaaagatgaggaggctgtgaagaagtatgtttactatggaggaatggaacattccataagaaaagaggtgtggccatatttacttggacactacaaatttggaagtactcctagagatcggcaagagactgaccggacagcacgagaggaatttcgagccatcgtagaggaatggaaggatgtggaaaatgtgatacagcaacaggagaaagaacaagaagtggacggaatctcggtggacagcactggcagcaaggatgaagtttatgaacaattagaaatgattcacaaggggctggaaaaatccgaagctttttctcaccaaagtgtgagcatcgaggaacccgagatcgacgggcttgatgaaaatacaaaggccaggctattgagtggccagtcaattattccaaatggcgacaacaccaagaatgatttttgtagtgattgtggtcaagataacgaaaagttgatttcgacatcgttaacgtgtcagggaggtagcaaaggagtaaattctgtgatggaactgaacggaaatggaatttgtcacattacaaacggccgccacacacctccctaccgggaaggaagtactgagggaaagggatccaaaagctcggcaattgaggagggagatgatgataggcccatctattgtaaacaatgcagccagtcaagcagcaccggcaaagcttcatgttcctactctcctgaacttctcgacaatttcagcttaaatctgcatcgaatagagaaggacgtacttagatgtgaccgaaactatccttacttcaccaacgaaaacctcgacaaactgcgcaacgttatcagcagctacgtgtggaagaccctggatgttggctatgtgcagggaatgtgtgatcttgtggctcctcttctcgtcatatttgataacgaggccataacctacaactgttttgtggatcttatgcaaagaatgaacaacaatttcccacacgggggagccatggatacccactttgcaaacatgagatcgttgattcaaatcctggatcctgaaatgtttgagcatcttcaacagaatggagacttgacgcatttttacttctgctacagatggtttctccttgacttcaaacgagagcttgtttatgatgacgtgtttgttgtatgggaatctatctgggctgccagacattgtacatcggagcacttcgtactttttatcgctcttgcgctgcttcagttctacaggtacgtaataatatgctcttaa

Transcript

g27480.t1

ATGTCACTCACTATGTTATGTTTTGCAGAGAGCCCCATTCTTAAAATGAAGTTAAACTTTACTGCCTCACTAAACAGTAGTGTCAACAGAAAAATTAATGGCTATAACATCAGTGGGCATTGTGGCAAGTTTTTGTGGATTAGAATTGCTTTGTTAGAAAAACTTCTAAGCAAGATTGTGGAGGATCTTCATACCAATGCTAGCCAATTCTATGAGCCTGAAGCACTCTTGCGTGACCCTGCTGATGGAAGAATATTCATTGAACTCTTAGATGGTCCATGTGCTCTTGATTTCTCAAAGATGAAGACTCCTGATAGTTATTGGACTGATCCCACTGCAGATGAATTAGTTCAAAGACACAGAATTCACAGTGGGTTGTTTCAACAGATGCCTGGAATGCCAACGTCAACTTCTAGGCCACAACTCGGAGCTAGGATGTCATCTTATGAGGAAAACTTAGCCGTGGCTCCATCATTAGCCAGAGAACACATAGAGTCGCTTCATCAGAACTCCCATGCTGCACTTTTGTACGGCAAAAATAATGTCTACCTTGAACCGCATGAAGAACACCCCATTGCAGGTTACTTGTCATTGCACAAGAGTAATGATAGTTTGCTCCTAAAGTGGACGCCAAATAAGTTGATGAGTGGATCATGTGAAAGAGAAAAGAGTCAATTTTGGGACTATGCCCTTACAGTCAACTTACATGATGTTGTGTATATCCACTGTCATCAGCATGGTGTTTATGGTGTGGTTATACTCATTGGACAAGATGGTGTCCAGCGTCCACCAATTCGTTTCCCAACAACGGGCTCTCTGCTGTCATTCTTAAACTGCCTTGAGAATGGACTTCATCCACATGGGGAGCTTGACCCACCCCTATTTAATCCACGCTCCAAAGGACTTGGTCTGCCACGACTCAAAAAGACCCCTTCAGGGGACAACCTGCTGCTAAATGTGTTGTCAAAGGGAGAAAACACAAACCAGGATTATGTGTTTAGATTGGTGTCTGGAGCAAAGTCAGAGGACTTGGTGAGTAAAGAAATGGATCGATTTTCTTCCCAAAAGTCTTTCAAGAAGCCTACTGGTTTGCCATGGAAACGACAAGACTTCAGTGCACGAGTGCAGTCcagttttaaaagaaaccaGAAACAGTCTTCTCCACGCACTATGGAATGTCTAAGCACTGCCTGTGAAACCATGAGAAGACAGATCACTCTTCGAGCCTTCAATGGATGGTTATCTTATGTGCGACATCTGAAGACTGTGCGAACACACCTATTATGGCTTGTCCATCATAATAAGGTCACTTCAGAAGAGAATGGAGTGGATTACTCTCAAGGCCTAACGGAACAAGTCTGGAGGGGAATGTACCACAAAGGACAGATCAAAGATGAGGAGGCTGTGAAGAAGTATGTTTACTATGGAGGAATGGAACATTCCATAAGAAAAGAGGTGTGGCCATATTTACTTGGACACTACAAATTTGGAAGTACTCCTAGAGATCGGCAAGAGACTGACCGGACAGCACGAGAGGAATTTCGAGCCATCGTAGAGGAATGGAAGGATGTGGAAAATGTGATACAGCAACAGGAGAAAGAACAAGAAGTGGACGGAATCTCGGTGGACAGCACTGGCAGCAAGGATGAAGTTTATGAACAATTAGAAATGATTCACAAGGGGCTGGAAAAATCCGAAGCTTTTTCTCACCAAAGTGTGAGCATCGAGGAACCCGAGATCGACGGGCTTGATGAAAATACAAAGGCCAGGCTATTGAGTGGCCAGTCAATTATTCCAAATGGCGACAACACCAAGAATGATTTTTGTAGTGATTGTGGTCAAGATAACGAAAAGTTGATTTCGACATCGTTAACGTGTCAGGGAGGTAGCAAAGGAGTAAATTCTGTGATGGAACTGAACGGAAATGGAATTTGTCACATTACAAACGGCCGCCACACACCTCCCTACCGGGAAGGAAGTACTGAGGGAAAGGGATCCAAAAGCTCGGCAATTGAGGAGGGAGATGATGATAGGCCCATCTATTGTAAACAATGCAGCCAGTCAAGCAGCACCGGCAAAGCTTCATGTTCCTACTCTCCTGAACTTCTCGACAATTTCAGCTTAAATCTGCATCGAATAGAGAAGGACGTACTTAGATGTGACCGAAACTATCCTTACTTCACCAACGAAAACCTCGACAAACTGCGCAACGTTATCAGCAGCTACGTGTGGAAGACCCTGGATGTTGGCTATGTGCAGGGAATGTGTGATCTTGTGGCTCCTCTTCTCGTCATATTTGATAACGAGGCCATAACCTACAACTGTTTTGTGGATCTTATGCAAAGAATGAACAACAATTTCCCACACGGGGGAGCCATGGATACCCACTTTGCAAACATGAGATCGTTGATTCAAATCCTGGATCCTGAAATGTTTGAGCATCTTCAACAGAATGGAGACTTGACGCATTTTTACTTCTGCTACAGATGGTTTCTCCTTGACTTCAAACGAGAGCTTGTTTATGATGACGTGTTTGTTGTATGGGAATCTATCTGGGCTGCCAGACATTGTACATCGGAGCACTTCGTACTTTTTATCGCTCTTGCGCTGCTTCAGTTCTACAGGTACGTAATAATATGCTCTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2NKQ1	Small G protein signaling modulator 1 OS=Homo sapiens OX=9606 GN=SGSM1 PE=1 SV=2
Q8BPQ7	Small G protein signaling modulator 1 OS=Mus musculus OX=10090 GN=Sgsm1 PE=1 SV=2
Q80U12	Small G protein signaling modulator 2 OS=Mus musculus OX=10090 GN=Sgsm2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003723 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00566 all species →	RabGAP-TBC	Rab-GTPase-TBC domain	Family	Interproscan
PF12068 all species →	PH_RBD	Rab-binding domain (RBD)	Domain	Interproscan
PF02759 all species →	RUN	RUN domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037213 all species →	Homologous_superfamily	RUN domain superfamily	Interproscan
IPR000195 all species →	Domain	Rab-GAP-TBC domain	Interproscan
IPR037745 all species →	Domain	Small G protein signalling modulator 1/2, PH domain	Interproscan
IPR035969 all species →	Homologous_superfamily	Rab-GAP-TBC domain superfamily	Interproscan
IPR004012 all species →	Domain	RUN domain	Interproscan
IPR021935 all species →	Domain	Small G protein signalling modulator 1/2, Rab-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22957 all species →	TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0090630 all species →	Biological Process	activation of GTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21847	SGSM1, RUTBC2; small G protein signaling modulator 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.