Gene detail

Detailed information of g2749.t1.1 in Haliclystus octoradiatus

Genomic Location: :...
NR annotation: XP_012566299.1, zinc metalloproteinase nas-13 isoform X2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

g2749.t1

ATGATCAAATATTTAGTATGCGGTATTGTAATGATGAGCGTAGAATTCACATGGGCAAAATCTGTTGGTATTTCTAAACCTCTACTGTTTGAAGGGGATATTATATTAACGAAACAGCTTGCCAATTTTATAAGCCATTCTGAAAAAGAGGCAGCTGTTAGTAACAGCAAACGGTATGTGATTAAAGATAATCTGTTTCACTGGAAGGATGGAATAGTGCCATACAACGTTGCAGACAACATTGATGATGCGGGTCGGTACtacattgataaatctatTGAAGAACTTGAGACAAAGACATGCATCCGATTCATAAAAAGGAAAGATGAAGAAGATTATATAGACTTCACTGATGGTAATGGTTGCTCTTCGAATATTGGTCGACAAGGAGGCAAACAACCAATAATCATTGGCGAAGGTTGTCTTAGCAAGGGTGAGGTCCTCCATGAAATCCTCCATGCCCTTGGATTCTTTCACGAACAATCTAGAATTGACAGAGATTTTTATGTGAAAGTTTTATGGTGGAATGTTGTACCAGATGCTGAGAAAAACTTTGCAACGTATGGACATGGTATTGTTGATACTTTTGGTGTCCCATACGACAAACAAAGTCTAATGCACTATGACAATGTCGCATTTACTAAAAATGGGCAACACACATTAGAGGCTATTGGTAATCCCAATGAAAAACTGGGTAGACATGACTTAAGTGATGGGGATATCAAACAGATCCGTATGCTGTACAAATGCAGAGCTCACGGAGAATCAGAATATCGAGTGACAATTAGAACAGGAGATGGCTATTTGGCAGGAACAGATTCAATATATACATTAGAGATTATGAGTGCACACCAACGGGTAATGACTATGGATATCGATGGTGAAGGTGCTAAACTGGAAAGACTAGGGAGAGACGTATTCGTGTTTCACGGTAAAGATGTTTTACCAATCGATCGAATGATTTTACAGCGGAAAGAGGTCAGAGGAATGAATTCTGATTGGTTCGTTCGATGGATTGTGATCGAAGCAAATGAGTCAAAATACGTTTTTGACATTGAAAGATGGGTGATGGATGATAAGCCAAAGAATTTAATTGCAACTCTAGGATCATTTTGGTGTAAAAGTCAAATGGAGGTATTCCAAGATTCCCTATGCGTTGAGACGACATATTTGTTAACATGTAAGCAAATACGTGTTTATAAAAGACGATGGTTTGTACTCGCTTTATTTTGCTTCGTTGTCTTATCAAATAACTGCATGTGGATCAGTACATCCTCTATCGCGAGTATTTCTGCTGCGTATTATGATAAGAAGTACGATGTCTTGAATTGGTTAAGCTCCATTTATCCAGTCTCATTTCCAATCCTTTTTCTTCCTGGCACTTTCATTATTACACGATATGGCATCAAGTTTAGCTTAGTAATGGGTACATGTTTCAATGGAATCGGTAGCGCATTACGATTTGCTGAAGCAGGTAGACACGGATTCGATTTGATGATATCAGgacaattttttaatgcaCTCGCCAATGGGTTAATCCTGCAAATGCCACCTTACATATCAGCAGTATGGTTTGCCGATAAAGAGAAAGGCACAGCTACATCACTAGCTGTTTTAAGCTCCTCCGTTGGTGTTGCGACTGGGTACTTCATGAGCTCATCTATCGTGACGTCTACTCATAACATGACAATAGAGAGCGAGCAAATGCATTATCTATTAGGTGCCCAAATGATGTTCACTATCATCCAGATACCATTGGTTATTTTATTCGTTGGTAACGAACCGCCCAGTCCACCAACTGTATCACAAGCTCTGCTCATATCATCTAACCTTCAAACAAATGATTCTTACTCGCCAGCtgatttaaaatcatttaaagCATCTGTTACGAAATTGATGAGTAACATTGATTATCATGTGCTACTTCAAGCatattcaataatatattcattaCAATCTGCAATAATTGCAATTCTTGTTGAGTTATTAATTGCGACATTCCCTGGAAAAGAAGCCAAGATTGGATTAATAGGAACTATACAGAATATTTTGGGGATCGTGGGGACATTTTTTGTTGGGATACTGTTAGACAAAGCCAAAGTTTACAAAGAGTTTGCTGTTTGGACATTTTGTCTCTCATTCGTGCTAATGGTGTTATTTTCTTATGGATTACTAGTTATAAAGTCATGGGTTCTGATTTCTGTGTGCATGTCTGCTCTTGGATTAGTTGCTCTACCAAATCTCTCATCCGGAATGGAACATGTAGTTGAAATAACTTATCCGATACCAGAGAGTTTATCTGCTGGGTGTATTGGTGCATTTGGAAGTGCATATGCGTTTGCGCTGATAACAATATCAGGAGAACTTTTATCTAATAGAAATTACCTCCAAGTTTGCGTAATATTCTGTTCATTGTATTTATTAGGATTCTTTTTAATTTGCATTTCGAAAGCCGAACATGTTAGAAGTAAAGCTGAAAAGCAGATTTATCCCAGCGTtataaacaatcaaacttgcACTTGTTAA

Transcript

g2749.t1

Protein

Uniprot

Uniprot term	Description
Q20191	Zinc metalloproteinase nas-13 OS=Caenorhabditis elegans OX=6239 GN=nas-13 PE=2 SV=5
P55112	Zinc metalloproteinase nas-4 OS=Caenorhabditis elegans OX=6239 GN=nas-4 PE=2 SV=4
P55115	Zinc metalloproteinase nas-15 OS=Caenorhabditis elegans OX=6239 GN=nas-15 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07690	MFS_1	Major Facilitator Superfamily	Family	Interproscan
PF01477	PLAT	PLAT/LH2 domain	Domain	Interproscan
PF01400	Astacin	Astacin (Peptidase family M12A)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006026	Domain	Peptidase, metallopeptidase	Interproscan
IPR034035	Domain	Astacin-like metallopeptidase domain	Interproscan
IPR049680	Family	Solute carrier family 49-like	Interproscan
IPR036259	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR001024	Domain	PLAT/LH2 domain	Interproscan
IPR011701	Family	Major facilitator superfamily	Interproscan
IPR001506	Domain	Peptidase M12A	Interproscan
IPR024079	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR036392	Homologous_superfamily	PLAT/LH2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10924	MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008237	Molecular Function	metallopeptidase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0004222	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0015232	Molecular Function	heme transmembrane transporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0020037	Molecular Function	heme binding	Interproscan
GO:0051184	Molecular Function	obsolete cofactor transmembrane transporter activity	Interproscan
GO:0097037	Biological Process	heme export	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan